Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq91 109 5e-19 seq266 104 2e-17 >seq91 Length=4318309 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | || | ||| || ||||| || |||||||| || | Sbjct 4011709 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4011650 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || ||||||||||| ||| |||| | | ||||||||| || || Sbjct 4011649 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 4011590 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 4011589 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 4011530 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 4011529 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 4011482 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | || | ||| || ||||| || |||||||| || Sbjct 4012623 AGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 4012564 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||||| ||| || ||||||||||| || |||| | | ||||||||| || | Sbjct 4012563 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 4012504 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 4012503 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 4012444 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| || ||||| || || || || || || ||||||||| Sbjct 4012443 CTTCAAGAGTAATTGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 4012394 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | ||| || ||||| || |||||||| || Sbjct 4012394 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 4012335 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || ||||||||||| ||| |||| | | |||||| || || || Sbjct 4012334 CAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 4012275 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 4012274 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAAC 4012215 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || || ||||||||||| Sbjct 4012214 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| || ||||| || |||||||| || || ||||||| | Sbjct 4011925 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 4011866 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || | || | | |||||| || || || || ||||| ||| Sbjct 4011865 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 4011806 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | || || ||| ||| | |||| ||| | | Sbjct 4011805 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 4011746 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 4011745 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 >seq266 Length=585698 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||||| | ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 268198 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 268139 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || || | |||||| ||||| ||||| ||||||||||| ||| |||||| ||||| Sbjct 268138 TGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGCG 268079 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 268078 ACTCGATGAT 268069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471924751912320