Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6772 107 1e-18 seq91 96.9 2e-15 >seq6772 Length=249 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 156 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 215 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 216 GCCGGTATTTAGCCTTA 232 >seq91 Length=4318309 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||||| || || ||| ||||| || || ||||| |||||| Sbjct 4012621 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4012562 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || ||||| || || | || || || | ||| Sbjct 4012561 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4012502 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | || || | || ||| Sbjct 4012501 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 4012442 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || ||||| |||| ||| ||||| || ||||||||| Sbjct 4012441 TCAAGAGTAATTGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 4012394 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| |||| ||||| || || || ||||| || || ||||| |||||| Sbjct 4012165 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 4012106 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || || || || || || | || ||||||| ||| Sbjct 4012105 AGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4012046 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 4012045 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 4011986 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || |||||||| ||||| || |||||||| Sbjct 4011985 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4011939 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||||| || || ||| ||||| || || ||||| |||||| Sbjct 4012393 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4012334 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || || || || || || | || ||||||| ||| Sbjct 4012333 AGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4012274 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | ||||| | ||||| Sbjct 4012273 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 4012214 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| || || || |||||||| Sbjct 4012213 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| ||||| || || ||| ||||| || || ||||| |||||| Sbjct 4011709 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4011650 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || || | || || || | ||| Sbjct 4011649 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 4011590 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 4011589 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 4011530 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| || || || ||||||||||| Sbjct 4011529 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTT 4011480 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || |||| |||| ||||| || || ||| ||||| || || ||||| | Sbjct 4011941 CATT-CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 4011883 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||| || |||| || | || || || ||||| || || | || ||||| | Sbjct 4011882 CAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAG 4011823 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| |||||| || || ||||||||||| | || || | | Sbjct 4011822 GGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCT 4011763 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || || || || |||| ||| ||||| || |||||||| Sbjct 4011762 CAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334886281792013