Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq91 107 2e-18 seq12 107 2e-18 >seq91 Length=4318309 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || ||||||| |||||| || || || ||| Sbjct 4012363 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGCTTGCCA 4012304 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 4012303 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 4012244 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || || | ||| | || ||||| ||||| || Sbjct 4012243 ACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 4012184 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 4012183 TTGACAAAAATCTGCAT 4012167 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| || || ||||||| |||||| || || || ||| Sbjct 4012135 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGCTTGCCA 4012076 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 4012075 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 4012016 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||| |||| || Sbjct 4012015 ACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTC 4011956 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4011955 TTCACAAAGATCTGCAT 4011939 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||||| || || || ||| Sbjct 4011679 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4011620 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 4011619 GCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 4011560 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 4011559 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4011500 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 4011499 TTGACAAAGATCTGCATG 4011482 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||||| || || || ||| Sbjct 4012591 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4012532 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 4012531 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 4012472 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || || || ||||| || Sbjct 4012471 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTCAGGGTC 4012412 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 4012411 TTCACAAAGATCTGCATG 4012394 >seq12 Length=7699506 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||| || || ||| |||||| || || |||||| Sbjct 4631027 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTACCA 4631086 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||| || || || |||||||| || ||||| ||||| || Sbjct 4631087 GCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4631146 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||||||||| ||| Sbjct 4631147 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTT 4631206 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4631207 TTCACAAAGATCTGCAT 4631223 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || |||||| || || |||||| Sbjct 4631711 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGCTGCTTACCA 4631770 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || ||||||||||| || ||||| ||||| || Sbjct 4631771 GCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4631830 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 4631831 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4631890 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4631891 TTCACGAAGATCTGCAT 4631907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420057988449876