Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq266 141 2e-28 seq29 93.3 8e-14 seq243 89.7 1e-12 >seq266 Length=585698 Score = 141 bits (156), Expect = 2e-28 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || ||| |||||||| || |||||||||||| |||||| || | | | |||| ||| Sbjct 270434 CACCCCTTTGCTGACCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGG-CCA 270376 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| ||||| | || || || ||||||| |||||||| ||||| || ||| | | Sbjct 270375 GCTCGCAGCTGGCTTCCAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGG- 270317 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 ||| |||||| | || ||| ||| | ||||| |||||| |||||||||| ||| Sbjct 270316 CGCTGGGCCTCGGGGCTCTCGAACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCC 270257 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||||||||||||||||||| | ||| ||| |||||||||| Sbjct 270256 TGCACGCCGATGCCGATGGGGCGGTGGCGCCTGTTGGAGCG 270216 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 268216 CCACCTCGTCTTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 268157 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| |||| |||||||||||| ||||| |||||| | ||| Sbjct 268156 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCG 268097 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 |||||||| ||| | ||| || | || |||||| | | ||||| ||| || Sbjct 268096 TGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 268037 Query 244884 TGCG 244887 |||| Sbjct 268036 TGCG 268033 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || ||||||||| || || ||||||||||| ||| ||||| |||| | |||| Sbjct 266871 ACCCGCTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 266812 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||| || | || ||||||| ||| | ||||| ||| Sbjct 266811 TCCTCCTTCCCCGTGTTCTTCTTCAAGTCGAGGAACTCAAAGATGTCCAGATGCCACGGC 266752 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| |||| || ||||| Sbjct 266751 TCCAGGTAGATGGCGAAAGCCCCGGG 266726 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||||||||||||||||||||||| ||||| | | || || ||||| | | || Sbjct 274809 GATGTTGAGGGACTGGCTCTGGTCGATGAAGGCTCCTCTGTCCGCTGCCATCTTCAGGAT 274750 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||| | |||| |||| |||||| | | | Sbjct 274749 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTACAGCTGCTTCAGGTCCTCGGGAATCTC 274690 Query 243994 TTCGATGTTCT 244004 |||||||| Sbjct 274689 GGGGATGTTCT 274679 >seq29 Length=8961240 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || ||||| ||||||||||| ||||| |||| || Sbjct 509434 GGGGAGAGAGTGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 509493 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 509494 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 509553 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 509554 ATTAGCAGAGATGAGG 509569 >seq243 Length=25666195 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || |||||||| || ||| | || || || || || ||| Sbjct 20269889 GTAGCTTTTGCAGCGGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 20269948 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | || | ||||| |||||||| || || ||||||||||||||||| || Sbjct 20269949 CTGAAGAAAAGGGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGCAGAGAT 20270008 Query 42828 GAGG 42831 |||| Sbjct 20270009 GAGG 20270012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944163045326480