Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq266 141 2e-28
seq29 93.3 8e-14
seq243 89.7 1e-12
>seq266
Length=585698
Score = 141 bits (156), Expect = 2e-28
Identities = 167/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376
|| ||| |||||||| || |||||||||||| |||||| || | | | |||| |||
Sbjct 270434 CACCCCTTTGCTGACCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGG-CCA 270376
Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436
||| ||||| | || || || ||||||| |||||||| ||||| || ||| | |
Sbjct 270375 GCTCGCAGCTGGCTTCCAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGG- 270317
Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495
||| |||||| | || ||| ||| | ||||| |||||| |||||||||| |||
Sbjct 270316 CGCTGGGCCTCGGGGCTCTCGAACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCC 270257
Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536
|||||||||||||||||||| | ||| ||| ||||||||||
Sbjct 270256 TGCACGCCGATGCCGATGGGGCGGTGGCGCCTGTTGGAGCG 270216
Score = 129 bits (142), Expect = 1e-24
Identities = 139/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763
||||||| || | ||||||||| || ||||| ||||| ||||| |||||||||||||
Sbjct 268216 CCACCTCGTCTTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 268157
Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823
||||||||| ||| || ||| |||| |||||||||||| ||||| |||||| | |||
Sbjct 268156 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCG 268097
Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883
|||||||| ||| | ||| || | || |||||| | | ||||| ||| ||
Sbjct 268096 TGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 268037
Query 244884 TGCG 244887
||||
Sbjct 268036 TGCG 268033
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062
|||| || ||||||||| || || ||||||||||| ||| ||||| |||| | ||||
Sbjct 266871 ACCCGCTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 266812
Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122
|| ||| || ||||||||| ||| || | || ||||||| ||| | ||||| |||
Sbjct 266811 TCCTCCTTCCCCGTGTTCTTCTTCAAGTCGAGGAACTCAAAGATGTCCAGATGCCACGGC 266752
Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148
|||| ||||| |||| || |||||
Sbjct 266751 TCCAGGTAGATGGCGAAAGCCCCGGG 266726
Score = 84.2 bits (92), Expect = 4e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933
|| ||||||||||||||||||||||| ||||| | | || || ||||| | | ||
Sbjct 274809 GATGTTGAGGGACTGGCTCTGGTCGATGAAGGCTCCTCTGTCCGCTGCCATCTTCAGGAT 274750
Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993
| |||||| || ||||| || |||||||||| | |||| |||| |||||| | | |
Sbjct 274749 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTACAGCTGCTTCAGGTCCTCGGGAATCTC 274690
Query 243994 TTCGATGTTCT 244004
||||||||
Sbjct 274689 GGGGATGTTCT 274679
>seq29
Length=8961240
Score = 93.3 bits (102), Expect = 8e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| |||| |||||| | || ||||| ||||||||||| ||||| |||| ||
Sbjct 509434 GGGGAGAGAGTGGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 509493
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
| || || ||||| ||| ||| || |||||| ||| | || ||||| || |||||
Sbjct 509494 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 509553
Query 42816 ATCAGCAGGGACGAGG 42831
|| ||||| || ||||
Sbjct 509554 ATTAGCAGAGATGAGG 509569
>seq243
Length=25666195
Score = 89.7 bits (98), Expect = 1e-12
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||| ||| | || || || || |||||||| || ||| | || || || || || |||
Sbjct 20269889 GTAGCTTTTGCAGCGGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 20269948
Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827
|| ||| | | || | ||||| |||||||| || || ||||||||||||||||| ||
Sbjct 20269949 CTGAAGAAAAGGGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGCAGAGAT 20270008
Query 42828 GAGG 42831
||||
Sbjct 20270009 GAGG 20270012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944163045326480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |