Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq682 96.9 3e-15
>seq682
Length=840739
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| || || ||||| |||| ||| || || | || |||||||||||||| || |||||
Sbjct 493805 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 493864
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349
||||| | ||||| ||||| ||||||||||| ||||| || || | ||||||
Sbjct 493865 ACTCCGAGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACC 493917
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG-TG 20592
|| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||
Sbjct 497138 GCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGCTG 497197
Query 20593 CGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652
| | || || |||||||||| | || ||||| ||||| ||||| || ||
Sbjct 497198 C-TGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACCCC 497256
Query 20653 TGTTCTTGAAAGCTC 20667
| || || |||||
Sbjct 497257 TTTTGCAGAGAGCTC 497271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441290467421320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |