Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq91 120 7e-22
seq12 120 7e-22
>seq91
Length=4318309
Score = 120 bits (132), Expect = 7e-22
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || || || | ||| ||| || ||||| || ||||
Sbjct 4012397 CATG-CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 4012339
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || ||||| | || || || ||||||||||| | ||| || ||
Sbjct 4012338 CAGACAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---AT 4012282
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
| ||| || ||||| || |||||||| || || ||||| || || || | ||| || |
Sbjct 4012281 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGG 4012222
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || ||||| |||||||| || ||||||||
Sbjct 4012221 GCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167
Score = 118 bits (130), Expect = 3e-21
Identities = 144/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||| | || ||||| |||||||| | || || || |||||
Sbjct 4011674 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 4011615
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||| | ||| || |||||| || ||||| || |||||||| || || |||||
Sbjct 4011614 GATCAGCCTCTGCTG---GTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 4011558
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | || || | || || || || ||||| ||||| || ||||| |||||
Sbjct 4011557 ATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTT 4011498
Query 288459 GACGAATATCTGCAT 288473
||| || ||||||||
Sbjct 4011497 GACAAAGATCTGCAT 4011483
Score = 102 bits (112), Expect = 2e-16
Identities = 141/196 (72%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||| | || || || || ||||| | || || || |||||
Sbjct 4012130 TTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAA 4012071
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||| | ||| || ||| ||| || ||||| || |||||||| || || |||||
Sbjct 4012070 GATCAGCCTCTGCTG---ATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 4012014
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | || || | || || || || ||||| ||||| || |||| |||||
Sbjct 4012013 ATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTT 4011954
Query 288459 GACGAATATCTGCATT 288474
|| || |||||||||
Sbjct 4011953 CACAAAGATCTGCATT 4011938
>seq12
Length=7699506
Score = 120 bits (132), Expect = 7e-22
Identities = 169/236 (72%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || | || | ||| ||| || ||||| || ||||
Sbjct 4631677 CATG-CCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 4631735
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || || || ||||||||||| | ||| ||| |
Sbjct 4631736 CAGACAGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAG 4631795
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || || || || |||||||| || || ||||| ||||| || | || || | |
Sbjct 4631796 GAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCT 4631855
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
| || || || ||||| ||||| || ||||| ||||| ||||| ||||||||| ||
Sbjct 4631856 CAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 4631911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179428848972794
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |