Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq91 120 7e-22 seq12 120 7e-22 >seq91 Length=4318309 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || || || | ||| ||| || ||||| || |||| Sbjct 4012397 CATG-CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 4012339 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || ||||| | || || || ||||||||||| | ||| || || Sbjct 4012338 CAGACAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---AT 4012282 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| || |||||||| || || ||||| || || || | ||| || | Sbjct 4012281 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGG 4012222 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || ||||| |||||||| || |||||||| Sbjct 4012221 GCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| |||||||| | || || || ||||| Sbjct 4011674 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 4011615 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || ||||| || |||||||| || || ||||| Sbjct 4011614 GATCAGCCTCTGCTG---GTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 4011558 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 4011557 ATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTT 4011498 Query 288459 GACGAATATCTGCAT 288473 ||| || |||||||| Sbjct 4011497 GACAAAGATCTGCAT 4011483 Score = 102 bits (112), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || || || || ||||| | || || || ||||| Sbjct 4012130 TTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAA 4012071 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || ||| ||| || ||||| || |||||||| || || ||||| Sbjct 4012070 GATCAGCCTCTGCTG---ATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 4012014 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | || || || || ||||| ||||| || |||| ||||| Sbjct 4012013 ATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTT 4011954 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 4011953 CACAAAGATCTGCATT 4011938 >seq12 Length=7699506 Score = 120 bits (132), Expect = 7e-22 Identities = 169/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || | || | ||| ||| || ||||| || |||| Sbjct 4631677 CATG-CCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 4631735 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || ||||||||||| | ||| ||| | Sbjct 4631736 CAGACAGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAG 4631795 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| || || ||||| ||||| || | || || | | Sbjct 4631796 GAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCT 4631855 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || || || ||||| ||||| || ||||| ||||| ||||| ||||||||| || Sbjct 4631856 CAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 4631911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179428848972794