Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-21 seq519 91.5 2e-13 seq120 91.5 2e-13 seq3491 89.7 6e-13 seq547 89.7 6e-13 >seq12 Length=7699506 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||| |||| ||| ||||| || || ||||| |||| | Sbjct 4631681 CCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4631740 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || ||||||||||||||||| || || | |||||| || | || Sbjct 4631741 AGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 4631800 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || || | | | | ||||| || | || || Sbjct 4631801 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 4631860 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || || ||||| || ||||| |||||||| Sbjct 4631861 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 4631910 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | |||| ||| | ||||| || |||||| || || ||||| || | Sbjct 4630996 ACCACCCCTGAGGCGCAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 4631055 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || ||||||||||||||||| || || | |||||| || | || Sbjct 4631056 CAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGG 4631115 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || || | || | | ||||| || | || || Sbjct 4631116 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAAC 4631175 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 4631176 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | |||| ||| | ||| | ||| ||||| || || ||||| || | | Sbjct 4631225 CCTCCTCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 4631284 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||||||||||||||| || || | |||||| || | || Sbjct 4631285 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGA 4631344 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || || | || | | ||||| || | || || Sbjct 4631345 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 4631404 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || | || || |||||||| ||||| Sbjct 4631405 TCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631451 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||| |||| ||| ||||| || || ||||| || | | Sbjct 4631453 CCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 4631512 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||||||||||||||| || || | |||||| || | || Sbjct 4631513 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGA 4631572 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || || | || | | ||||| || | || || Sbjct 4631573 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 4631632 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || | || || |||||||| ||||| Sbjct 4631633 TCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631679 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4634605 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4634664 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4634665 TACTAACGAGGA 4634676 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4635353 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4635412 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4635413 TACTAACGAGGA 4635424 >seq519 Length=23630376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 23376955 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 23376896 Query 57067 TACTACCGAGGATTGA-ATATA 57087 ||||| |||||| ||| ||||| Sbjct 23376895 TACTAACGAGGAATGAGATATA 23376874 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 23363790 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 23363849 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 23363850 TACTAACGAGGA 23363861 >seq120 Length=16759274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 13552441 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 13552382 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 13552381 ATACTAACGAGGA 13552369 >seq3491 Length=11026 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3005 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2946 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2945 TACTAACGAGGA 2934 >seq547 Length=1850934 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 640702 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 640643 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 640642 TACTAACGAGGA 640631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 56998 AAAAATTTTC-----TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||||||||| ||| || | | |||||||||| ||||||||||||||||||||| Sbjct 1575779 AAAAATTTTCGTACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 1575838 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 1575839 GATACTTACCACTATACTAACGAGGA 1575864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543111470442320