Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq91 131 2e-25 seq12 107 2e-18 >seq91 Length=4318309 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | ||||||| ||||| Sbjct 4012606 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4012547 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 4012546 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4012487 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || |||||||| | ||| | ||| Sbjct 4012486 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTC 4012427 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || || || || ||||| Sbjct 4012426 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4012395 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | ||||||| ||||| Sbjct 4011922 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4011863 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| |||| |||| |||||| || || ||||| ||||| || || Sbjct 4011862 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 4011803 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 4011802 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 4011743 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 4011742 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | ||||||| ||||| Sbjct 4011694 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4011635 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| ||||||||| || ||||| ||||| || || Sbjct 4011634 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4011575 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 4011574 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4011515 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || ||||| || Sbjct 4011514 TTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTT 4011480 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | || || | ||| Sbjct 4012150 AGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCT 4012091 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| ||||| ||||| ||||| || || Sbjct 4012090 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 4012031 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || |||| ||| | |||| Sbjct 4012030 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTC 4011971 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| || || || || || |||||| Sbjct 4011970 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 4011938 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | || || | ||| Sbjct 4012378 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCT 4012319 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| ||||| ||||| ||||| || || Sbjct 4012318 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 4012259 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||||| || || || || | || | |||| Sbjct 4012258 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTC 4012199 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || ||||| ||||| Sbjct 4012198 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 >seq12 Length=7699506 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | | |||||| | ||| Sbjct 4631012 AGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 4631071 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || |||| |||| |||||| || || ||||| || || || || Sbjct 4631072 TCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4631131 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || || || | || | |||| Sbjct 4631132 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4631191 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| ||||| || || || ||||| Sbjct 4631192 TTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499551597508120