Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq91 87.8 1e-12 >seq91 Length=4318309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| || ||| | | | ||||| | || Sbjct 4012369 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGC 4012310 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| | ||| || ||| ||||| ||||||||||| || ||| Sbjct 4012309 TTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 4012250 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| || || || || | ||| ||||| || || ||| Sbjct 4012249 GCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 4012190 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| Sbjct 4012189 AGGGTCTTGACAAAAATCTGCAT 4012167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| || || | | | ||||||| | || Sbjct 4011685 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 4011626 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| | ||| ||||| ||||| ||||||||||| || ||| Sbjct 4011625 TTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 4011566 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || || || || | ||| ||||| || || ||| Sbjct 4011565 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 4011506 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || ||||| || Sbjct 4011505 AGGGTCTTGACAAAGATCTGCATGTT 4011480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357326999665055