Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq12 127 2e-24
seq91 109 5e-19
seq266 86.0 6e-12
>seq12
Length=7699506
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | |||||||| || || || ||||| ||| || |||||| |
Sbjct 4631009 CGCAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 4631068
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| | |||| | ||||||||| || || ||||||||||||
Sbjct 4631069 TCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 4631128
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | ||| || || | ||| |
Sbjct 4631129 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 4631188
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||||||||| ||||| ||||| ||||||||
Sbjct 4631189 GTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || ||||| ||| || |||||| |
Sbjct 4631237 CGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 4631296
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| | |||| | ||||||||| || || ||||||||||||
Sbjct 4631297 TCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 4631356
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | ||| || || | ||| |
Sbjct 4631357 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 4631416
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| |||| ||||| ||||| |||||||||
Sbjct 4631417 GTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCATG 4631452
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | || || || || || || ||||| ||| || |||||| ||| ||
Sbjct 4631470 CACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTC 4631529
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || |||||| | |||| | ||||||||| || || |||||||||||||||
Sbjct 4631530 CAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 4631589
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
||| || ||| | | || | |||||| | ||| || || | ||| | || ||
Sbjct 4631590 GATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 4631649
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| |||| ||||| ||||| |||||||||
Sbjct 4631650 GCCAGTCAAGGTTTTCACAAAGATCTGCATG 4631680
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | || || || || || || ||||| || || ||||| ||| ||
Sbjct 4631698 CACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 4631757
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || |||||| |||||| | ||||||||| ||||| |||||||||||||||
Sbjct 4631758 GAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTG 4631817
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
||| || ||| | | ||| | |||||| | ||| || || | ||| | || ||
Sbjct 4631818 GATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 4631877
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| ||||| || || || || ||||||||
Sbjct 4631878 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 4631907
>seq91
Length=4318309
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| || | || || || || || || ||||| || || || ||| |
Sbjct 4012381 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCA 4012322
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| |||||| | |||||||||||| || ||||| ||||||
Sbjct 4012321 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 4012262
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | ||| || | ||| || |||| ||| |
Sbjct 4012261 TCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATG 4012202
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| ||||| || || ||||||||||||||
Sbjct 4012201 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| || | ||||| || || || || ||||| || || || ||| |
Sbjct 4012153 CGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCA 4012094
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| |||||| | |||||||||||| || ||||| ||||||
Sbjct 4012093 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 4012034
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | ||| || || | || |
Sbjct 4012033 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATG 4011974
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| |||| || || ||||| ||||||||
Sbjct 4011973 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4011939
>seq266
Length=585698
Score = 86.0 bits (94), Expect = 6e-12
Identities = 90/117 (77%), Gaps = 6/117 (5%)
Strand=Plus/Minus
Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723
|||||| ||| | |||| ||| ||||| | ||| |||||||||||||||||| ||||
Sbjct 268212 CTCGTCTTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 268153
Query 146724 CAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777
|| || | ||||| || |||| ||||||| ||| ||||| |||||||||||
Sbjct 268152 CAGGTTCTGCTGGTTGCT---CTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGG 268099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475412101269520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |