Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq567 174 2e-38 seq685 95.1 2e-14 >seq567 Length=396540 Score = 174 bits (192), Expect = 2e-38 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9730 AGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACA 9789 || ||||| ||||| || | |||||||||| |||| || || || || || ||||| | Sbjct 56405 AGTCGAGTTGTTTGGAAGAGCTGCTCGTCATCCCACTCTGGATGCTCCTGCTTGAGGATG 56464 Query 9790 TCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACT 9849 || ||||||| |||||| || |||||||| || || ||||||||||| | |||||| || Sbjct 56465 TCACAGACCCGGTTGTGCTCCCTCAGCCAGATTGTAGCGTACATCATCAGACCCGGGACC 56524 Query 9850 AAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATAC 9909 ||||||||||| || | |||||| | || |||| | || ||||| | || | || Sbjct 56525 AAACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGTTCCGGCACGTGCGGAGGGTAG 56584 Query 9910 AGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 ||||| | ||||||| || || || || |||||||||||||| |||||||| | ||| Sbjct 56585 AGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGATACATTTCTCCGTCAATCATCTG 56643 Score = 167 bits (184), Expect = 3e-36 Identities = 234/326 (72%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 8851 CGCCT-TGAGGAGTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACAT 8909 ||||| || || |||| | ||| | || |||| |||| || ||||| || ||||| | Sbjct 54332 CGCCTCTGTGG-GTTCGGGGTTTAAGACGTGGAAGGCGGTGAAGGGACAGCCTTTCACGT 54390 Query 8910 TGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGC 8969 || || ||||| ||| | || ||||| || | ||| || || || || | |||| Sbjct 54391 TGTTGCAGATGAGCTTCTGTAAGGAGGCGGTATTGATGATTTCGAAGCCCACTTTGCCGC 54450 Query 8970 CGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCA 9029 |||||||||| || ||||||||| | |||||||||||| ||||| |||| || ||||| | Sbjct 54451 CGAAGGTGCTCGGCTTCCAGTACTCGGGGGAGCAGATGGCGTTCCCCATCAGTCCTTTGA 54510 Query 9030 AGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTT 9089 || || || || |||| ||| | || |||| ||||||||||| || || ||||| | Sbjct 54511 GAGAGAAGGGCGCTCCCATCTCCACCATCGTCTCGCCGAAGATGGCGCCTGGCCGCGGCT 54570 Query 9090 TTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCA 9149 |||| || | || ||| | || || || | || |||| ||| || || || |||||| Sbjct 54571 TTTCCACAAGGAGGCCTGGATACAGCTCCATGGCATCGATGTCTCCGTAAAGCTCTTCCA 54630 Query 9150 ACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || || || || || ||| Sbjct 54631 GTTCAGCCGCCATTTCTTTTTCTCCT 54656 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | | || || | | |||| || | || Sbjct 55171 GATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTATTCCTGGTCGTGGATCTGGAAGGT 55230 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| || | |||||| ||||||| || ||||| ||||| || || |||||||| Sbjct 55231 GTCGGGCAGAAGCGGGTGCCAGTGGTAGAGAGTGTTGAATTCGGCTGCAATGCGGTTCTG 55290 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||| ||||| | ||| |||||| | |||||| || || | || | ||||||||| Sbjct 55291 GTATTGAAATCGCTGGT--TGAACAGCAGCTCCGGATCGAACTTGAGTTTGAAGTGGTAG 55348 Query 9670 CCGCTGAGTTGCTGGACATA 9689 ||||| | || || ||||| Sbjct 55349 CCGCTCAAGTGTTGCACATA 55368 >seq685 Length=1810514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || || ||||| ||||||||| | |||||||||||| ||| | | ||||| Sbjct 1605014 CCGCCAAACGTACTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 1605073 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||||||||||| || | ||| | ||||| || || || || || || | Sbjct 1605074 TTCAGGGAAAACGGAGATCCGATCTCAACCATGCTTTCTCCAAAAATACCATTTGGTTGA 1605133 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| ||||| || | ||| |||| ||| ||||| || || Sbjct 1605134 GGTTTCTCAAGCAGCAAGCCCAGGTAGAACTCCAGAGCGTCGATGTCTCCATACAGCTCT 1605193 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||| || || || | || | ||| ||| Sbjct 1605194 TCCAGTTCTGCTGCCTTTTCTTCCTCTCCT 1605223 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| ||||||| | ||||| |||||||| |||| || || ||| || Sbjct 1606652 TCGGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGCGATTCCGG 1606711 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| || || || ||||| | ||| |||||||| | || || | ||||||| Sbjct 1606712 TACTGGAACTGTGTCCCAAACAGCAGCTCAGGGTCAAACTTGAGGCTGAGGAAGTACCCG 1606771 Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| ||||||||||| | | || | ||| |||||||| ||||| Sbjct 1606772 CTGAGGTGCTGGACATAATCTTCAATGACAATCTTAATGGTCTCCCC 1606818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723592997588200