Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq567 174 2e-38
seq685 95.1 2e-14
>seq567
Length=396540
Score = 174 bits (192), Expect = 2e-38
Identities = 182/239 (76%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 9730 AGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACA 9789
|| ||||| ||||| || | |||||||||| |||| || || || || || ||||| |
Sbjct 56405 AGTCGAGTTGTTTGGAAGAGCTGCTCGTCATCCCACTCTGGATGCTCCTGCTTGAGGATG 56464
Query 9790 TCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACT 9849
|| ||||||| |||||| || |||||||| || || ||||||||||| | |||||| ||
Sbjct 56465 TCACAGACCCGGTTGTGCTCCCTCAGCCAGATTGTAGCGTACATCATCAGACCCGGGACC 56524
Query 9850 AAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATAC 9909
||||||||||| || | |||||| | || |||| | || ||||| | || | ||
Sbjct 56525 AAACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGTTCCGGCACGTGCGGAGGGTAG 56584
Query 9910 AGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
||||| | ||||||| || || || || |||||||||||||| |||||||| | |||
Sbjct 56585 AGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGATACATTTCTCCGTCAATCATCTG 56643
Score = 167 bits (184), Expect = 3e-36
Identities = 234/326 (72%), Gaps = 2/326 (1%)
Strand=Plus/Plus
Query 8851 CGCCT-TGAGGAGTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACAT 8909
||||| || || |||| | ||| | || |||| |||| || ||||| || ||||| |
Sbjct 54332 CGCCTCTGTGG-GTTCGGGGTTTAAGACGTGGAAGGCGGTGAAGGGACAGCCTTTCACGT 54390
Query 8910 TGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGC 8969
|| || ||||| ||| | || ||||| || | ||| || || || || | ||||
Sbjct 54391 TGTTGCAGATGAGCTTCTGTAAGGAGGCGGTATTGATGATTTCGAAGCCCACTTTGCCGC 54450
Query 8970 CGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCA 9029
|||||||||| || ||||||||| | |||||||||||| ||||| |||| || ||||| |
Sbjct 54451 CGAAGGTGCTCGGCTTCCAGTACTCGGGGGAGCAGATGGCGTTCCCCATCAGTCCTTTGA 54510
Query 9030 AGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTT 9089
|| || || || |||| ||| | || |||| ||||||||||| || || ||||| |
Sbjct 54511 GAGAGAAGGGCGCTCCCATCTCCACCATCGTCTCGCCGAAGATGGCGCCTGGCCGCGGCT 54570
Query 9090 TTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCA 9149
|||| || | || ||| | || || || | || |||| ||| || || || ||||||
Sbjct 54571 TTTCCACAAGGAGGCCTGGATACAGCTCCATGGCATCGATGTCTCCGTAAAGCTCTTCCA 54630
Query 9150 ACTCGGCAGCTATCTCCTTCTCACCT 9175
|| || || || || || || |||
Sbjct 54631 GTTCAGCCGCCATTTCTTTTTCTCCT 54656
Score = 86.0 bits (94), Expect = 9e-12
Identities = 140/200 (70%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551
|||||| |||||||| | ||| || | | || || | | |||| || | ||
Sbjct 55171 GATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTATTCCTGGTCGTGGATCTGGAAGGT 55230
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
|| |||| || | |||||| ||||||| || ||||| ||||| || || ||||||||
Sbjct 55231 GTCGGGCAGAAGCGGGTGCCAGTGGTAGAGAGTGTTGAATTCGGCTGCAATGCGGTTCTG 55290
Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
||| ||||| | ||| |||||| | |||||| || || | || | |||||||||
Sbjct 55291 GTATTGAAATCGCTGGT--TGAACAGCAGCTCCGGATCGAACTTGAGTTTGAAGTGGTAG 55348
Query 9670 CCGCTGAGTTGCTGGACATA 9689
||||| | || || |||||
Sbjct 55349 CCGCTCAAGTGTTGCACATA 55368
>seq685
Length=1810514
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025
||||| || || ||||| ||||||||| | |||||||||||| ||| | | |||||
Sbjct 1605014 CCGCCAAACGTACTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 1605073
Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085
|||| ||||||||||| || | ||| | ||||| || || || || || || |
Sbjct 1605074 TTCAGGGAAAACGGAGATCCGATCTCAACCATGCTTTCTCCAAAAATACCATTTGGTTGA 1605133
Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145
||||| || | | ||||| ||||| || | ||| |||| ||| ||||| || ||
Sbjct 1605134 GGTTTCTCAAGCAGCAAGCCCAGGTAGAACTCCAGAGCGTCGATGTCTCCATACAGCTCT 1605193
Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|||| || || || | || | ||| |||
Sbjct 1605194 TCCAGTTCTGCTGCCTTTTCTTCCTCTCCT 1605223
Score = 95.1 bits (104), Expect = 2e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| ||| ||||||| | ||||| |||||||| |||| || || ||| ||
Sbjct 1606652 TCGGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGCGATTCCGG 1606711
Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672
||||| || || || ||||| | ||| |||||||| | || || | |||||||
Sbjct 1606712 TACTGGAACTGTGTCCCAAACAGCAGCTCAGGGTCAAACTTGAGGCTGAGGAAGTACCCG 1606771
Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
||||| ||||||||||| | | || | ||| |||||||| |||||
Sbjct 1606772 CTGAGGTGCTGGACATAATCTTCAATGACAATCTTAATGGTCTCCCC 1606818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723592997588200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |