Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq266 123 4e-23 >seq266 Length=585698 Score = 123 bits (136), Expect = 4e-23 Identities = 123/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | ||||||| |||||| ||||| |||| Sbjct 274870 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCGGCGATGT 274811 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| || |||||||| ||||||||||| ||| || | || || ||||| || | Sbjct 274810 GGATGTTGAGGGACTGGCTCTGGTCGATGAA-GGCTCCTCTGTCCGCTGCCATCTTCAGG 274752 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||||||||||| || |||||||||||||||||| ||| Sbjct 274751 ATGGTCTTCTGGGAGATCTCCCACACCGTCTTGTACA 274715 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||||||| ||||||| ||| | |||||| | |||| | ||||||||| Sbjct 268194 CTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 268135 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||||||||| |||| ||| ||||||| |||| ||||| | ||| ||||| |||| || Sbjct 268134 CTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGCGA 268078 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || ||||| || |||| || ||| | | |||| ||||| | || |||| | Sbjct 271824 CTGGAACTCCCCGGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 271765 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | ||||| |||||| ||| ||||||||||| | |||||||||| Sbjct 271764 CTCGTTGTTGCCCAGGATCTGCGCGGTGGAGGCGGTGGGCATGGGGGACAGGAGCAGG 271707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795006873736880