Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq91 149 6e-31
seq12 145 8e-30
seq29 93.3 4e-14
seq243 91.5 1e-13
>seq91
Length=4318309
Score = 149 bits (164), Expect = 6e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || || || || || ||||| ||||||||| | || || ||| ||
Sbjct 4011480 AACATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4011539
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| ||||| || || |||||| | |||
Sbjct 4011540 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 4011599
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||| |||| || | ||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct 4011600 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 4011659
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| |||||| | || ||||| |||||||||| ||||||| ||
Sbjct 4011660 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 4011709
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| |||| || ||| |||
Sbjct 4011711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4011770
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| || || |||||| | || ||
Sbjct 4011771 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4011830
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| |||| || ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 4011831 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011890
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| |||||| | || ||||| |||||||||| |||| || ||
Sbjct 4011891 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4011937
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| |||| || ||| |||
Sbjct 4012167 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4012226
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || | || |||| ||||| || || |||||| |||| ||
Sbjct 4012227 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012286
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | ||| ||||| |||||||| || | || || || |||||||||
Sbjct 4012287 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012346
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| |||||| | || ||||| |||||||||| |||| || |||
Sbjct 4012347 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012394
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || || || || || || | || || ||| |||
Sbjct 4012395 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACAATTACTCTTGAAGTGGAGCCCAGT 4012454
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| || || |||||| | |||||
Sbjct 4012455 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4012514
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 4012515 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4012574
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| |||||| | || ||||| |||||||||| |||| || |||
Sbjct 4012575 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012622
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || | || ||||| |||||||| | || || ||| |||
Sbjct 4011938 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAG 4011997
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | || |||| ||||| || || |||||| |||| ||
Sbjct 4011998 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 4012057
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | ||| ||||| |||||||| || | || || || ||||||||
Sbjct 4012058 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAA 4012117
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| |||||| | || ||||| |||||||||| |||| || ||
Sbjct 4012118 CATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4012165
>seq12
Length=7699506
Score = 145 bits (160), Expect = 8e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 4631679 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631620
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| |||||| | || ||
Sbjct 4631619 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631561
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| |||| ||| || || |||||||| || | |||||||| |||||||||
Sbjct 4631560 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631501
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| |||||| | || ||||| |||||||| ||| | || || |||
Sbjct 4631500 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGGC 4631452
Score = 141 bits (156), Expect = 9e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||
Sbjct 4631910 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 4631851
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | ||| | || | || |||| ||||| ||||| ||||| | ||
Sbjct 4631850 AGTGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGAT 4631791
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||| |||| || | ||| || || ||||| || || | ||||||||| ||||||
Sbjct 4631790 CAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTGACTAC 4631731
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| |||||| | || ||||| |||||||| ||| | || || |||
Sbjct 4631730 AACATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGGC 4631680
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| || || ||||| ||||||||| | || || ||| |||
Sbjct 4631223 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631164
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| |||||| | || ||
Sbjct 4631163 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631105
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| |||| ||| || || |||||||| || | |||||||| |||||||||
Sbjct 4631104 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631045
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || |||||| | ||||||||
Sbjct 4631044 CATCCAGAAGGAGTCTACTCTGCATCTCGTGCTGCG 4631009
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 4631451 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631392
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| |||||| | || ||
Sbjct 4631391 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631333
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| |||| ||| || || |||||||| || | |||||||| |||||||||
Sbjct 4631332 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631273
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| |||||| | || || ||| | |||||||| | ||||| ||
Sbjct 4631272 CATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGAGGAGG 4631225
>seq29
Length=8961240
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || |
Sbjct 509569 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 509510
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| ||||||||||| || || || ||||||||||||| ||| ||||| || || || |
Sbjct 509509 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGG 509450
Query 133037 CCACCA 133042
| ||||
Sbjct 509449 CAACCA 509444
>seq243
Length=25666195
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454
||||||||| | ||||| || || |||||||| || |||||||| ||| |||||
Sbjct 20267084 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 20267025
Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509
|| || ||||| || | || |||||||||||||| || |||| ||||||||||
Sbjct 20267024 GTACTGGATGGGGAAGACGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 20266970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500079499016320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |