Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq366 104 9e-17 seq223 100 1e-15 seq12 86.0 2e-11 >seq366 Length=2320313 Score = 104 bits (114), Expect = 9e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || ||||||||||| | || || || || || Sbjct 1131363 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1131304 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||| | |||||||| |||||||| || || || ||||| Sbjct 1131303 AAAGATGCTGGAACCATTGCTGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCT 1131244 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 1131243 GCTGCGATTGCCTATGGTCT 1131224 >seq223 Length=4343944 Score = 100 bits (110), Expect = 1e-15 Identities = 237/353 (67%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| ||||| || ||||| || | || || ||| | || | | || ||| Sbjct 3135840 TCCATGGTGCTTACCAAGATGAAGGAGATTGCGGAGGCCTATCTGGGG-CGCAAGGTACA 3135898 Query 451319 GA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 || ||| || || || || || ||||| |||||||| | || || || || || ||||| Sbjct 3135899 GAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGA 3135958 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || || |||| | ||||| | || ||||| || || || ||||||||||| Sbjct 3135959 TGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGC 3136018 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTA 451492 | |||| ||||| || ||| || ||| | | | | || || ||| | | | Sbjct 3136019 TATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGTGAGAAGAATGTGCTCATC 3136076 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| || || || || ||| |||| || | ||| | ||||| ||||| | ||| Sbjct 3136077 TTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTT 3136136 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| | || |||||| || ||||| || || || || |||| || Sbjct 3136137 GAGGTCAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 3136189 >seq12 Length=7699506 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||||||| || || || || ||||| ||||| | Sbjct 4631908 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 4631849 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||||| | | || || || || || ||||| || |||||||||||||| Sbjct 4631848 TGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCA 4631789 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || ||| | || || || || |||||||| | || || | || || || Sbjct 4631788 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTGACTACAA 4631729 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 4631728 CATCCAGAAGGAATCCACCCTGCACTTGGT 4631699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975340640789684