Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq366 104 9e-17
seq223 100 1e-15
seq12 86.0 2e-11
>seq366
Length=2320313
Score = 104 bits (114), Expect = 9e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| |||| ||| | ||||| || || ||||||||||| | || || || || ||
Sbjct 1131363 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1131304
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| |||||||| | |||||||| |||||||| || || || |||||
Sbjct 1131303 AAAGATGCTGGAACCATTGCTGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCT 1131244
Query 451433 GCTGCTCTAGCATATGGACT 451452
||||| | || ||||| ||
Sbjct 1131243 GCTGCGATTGCCTATGGTCT 1131224
>seq223
Length=4343944
Score = 100 bits (110), Expect = 1e-15
Identities = 237/353 (67%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318
|| ||||| ||||| || ||||| || | || || ||| | || | | || |||
Sbjct 3135840 TCCATGGTGCTTACCAAGATGAAGGAGATTGCGGAGGCCTATCTGGGG-CGCAAGGTACA 3135898
Query 451319 GA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377
|| ||| || || || || || ||||| |||||||| | || || || || || |||||
Sbjct 3135899 GAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGA 3135958
Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
||| || || |||| | ||||| | || ||||| || || || |||||||||||
Sbjct 3135959 TGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGC 3136018
Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTA 451492
| |||| ||||| || ||| || ||| | | | | || || ||| | | |
Sbjct 3136019 TATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGTGAGAAGAATGTGCTCATC 3136076
Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552
||||| || || || || ||| |||| || | ||| | ||||| ||||| | |||
Sbjct 3136077 TTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTT 3136136
Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| || ||| | || |||||| || ||||| || || || || |||| ||
Sbjct 3136137 GAGGTCAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 3136189
>seq12
Length=7699506
Score = 86.0 bits (94), Expect = 2e-11
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || ||||| || || |||||||| || || || || ||||| ||||| |
Sbjct 4631908 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 4631849
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| | ||||||| | | || || || || || ||||| || ||||||||||||||
Sbjct 4631848 TGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCA 4631789
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| | | || ||| | || || || || |||||||| | || || | || || ||
Sbjct 4631788 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTGACTACAA 4631729
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || || ||||| ||
Sbjct 4631728 CATCCAGAAGGAATCCACCCTGCACTTGGT 4631699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975340640789684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |