Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq223 107 1e-17 >seq223 Length=4343944 Score = 107 bits (118), Expect = 1e-17 Identities = 315/479 (66%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| || |||||||||||||| | ||||| ||||| || || || || ||||| | Sbjct 3136948 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGAACCCCACGG 3136889 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || || ||||| || | | ||| | ||||| || || ||||| || | Sbjct 3136888 GGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCTTTTGTCATA 3136829 Query 517385 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAATAAGTTG 517442 | |||||||| | | |||| || | || | | || || ||||| || || | Sbjct 3136828 GCCCTCTCACCCTCATACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGAGTAGGTGG 3136771 Query 517443 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 | || ||||| ||| ||| ||||| || ||||| | | || | | ||||| Sbjct 3136770 TGAAGG-TCTGGGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCTGTCATC 3136712 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 517561 | || || ||||| || | || || || ||||| |||||||| | |||| | || Sbjct 3136711 ACTCCCCCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGGAGCAGATCC 3136652 Query 517562 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 || | || ||| | | || | ||| ||||| ||||| | |||||| ||||| ||| Sbjct 3136651 TGCACATTCTCAGACTTGTCTCCCATAAGGATAGCAGCTTGTACAGCAGCGCCATAAGCA 3136592 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||||| ||||||||||| | | | || || | |||||||||||| || | || Sbjct 3136591 ACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGTCCTGTAGC 3136532 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740 |||| | | ||| || ||||||| || || || || | || || || || | ||| Sbjct 3136531 AGTTTTTGGATCTTTGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTGGATCTG 3136473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780081871583638