Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq366 174 2e-38 >seq366 Length=2320313 Score = 174 bits (192), Expect = 2e-38 Identities = 366/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || ||||| | || ||||| ||||| || || || Sbjct 1130575 GCACCATAAGCCACAGCTTCATCAGGATTAATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1130634 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | | || || || ||||| || || || ||||| |||| ||||| Sbjct 1130635 AAATCCTGCAGAAGCTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGCACGATG 1130694 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || || | ||| | || || || | || || || || |||| Sbjct 1130695 TCGTGGATCTGCGACTTGTCAAGCTTGGCATCCCGCAGGGCCTTCTCCACGGGGTCCAGG 1130754 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| ||| || ||||| || || | ||||||||| || ||| Sbjct 1130755 GTGCCGCGGAACAGGTCGGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGAGGTGTAG 1130814 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | || || || | ||||||||||||||| | | || | | || || | Sbjct 1130815 AAGTCGATCCCCTCATAGAGAGAATCAATTTCAATGCTGGCCTGCGTGCTGGAGGACAGA 1130874 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| || || || || | ||||||| ||| | | ||| | | Sbjct 1130875 GTGCGCTTGGCACGCTCGCAGGCAGTGCGGAGGCGACGAACGGCTCTCTTGTTCTCAGTG 1130934 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | |||||| | || | | | | Sbjct 1130935 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTTG--- 1130991 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1130992 TCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1131051 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || ||||||||||| || ||| Sbjct 1131052 TCTTCAATCGTCAGAATAGACACATCAAAGGTGCCACCTCCAAGGTCAAAAATAAGAACG 1131111 Query 7577 TTC 7579 ||| Sbjct 1131112 TTC 1131114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635014323915320