Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1936 98.7 1e-15
seq519 93.3 5e-14
seq233 93.3 5e-14
seq215 93.3 5e-14
seq371 89.7 6e-13
seq266 82.4 9e-11
seq243 82.4 9e-11
>seq1936
Length=84681
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489
|||||||| || |||||||| || || | |||||||| || || |||||||| ||||
Sbjct 50690 TTACCACGAAGGGGAAATACTCCGTATTTGTCTCTACCAACCACTCCGAGACCAGAGACA 50631
Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA 168533
|| || ||||| ||||| || ||||| |||| ||||||||||||
Sbjct 50630 GCCAGTGTTTTGGCTGAGTCCCCCTCGGTCAGGATGAGTGTACA 50587
>seq519
Length=23630376
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 23361748 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 23361806
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 23363231 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 23363289
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 23377388 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 23377446
>seq233
Length=2717377
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 654327 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 654385
>seq215
Length=11859676
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 2635186 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2635128
>seq371
Length=585442
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 553673 TAGCTCAGTAGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 553615
>seq266
Length=585698
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||| | |||||||| |||| |||| |||||||| ||||| || || |||||
Sbjct 271794 GTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGCGCGGTGGA 271735
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844
|| ||||||||||| | || ||| || |||||
Sbjct 271734 GGCGGTGGGCATGGGGGACAGGAGCAGGCTGTT 271702
>seq243
Length=25666195
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266
||| ||||| || | ||| || |||||||| ||||| || || || ||||||||||||||
Sbjct 20271237 ATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCTTCCAGAGAGATGTTTTCCAT 20271178
Query 119267 AAAGTCAAAAGGATT 119281
||||||||||||||
Sbjct 20271177 GAAGTCAAAAGGATT 20271163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588866133889400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |