Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq12 136 9e-27
seq91 131 4e-25
>seq12
Length=7699506
Score = 136 bits (150), Expect = 9e-27
Identities = 166/225 (74%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| | || || || || |||||||| || || || || ||||| |||| || ||
Sbjct 4631230 TCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 4631289
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| |||||||| ||||||||||| ||||| || || | || || || || ||||||||
Sbjct 4631290 GCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCC 4631349
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
|| ||||| || || || ||| ||||||||||||||||| ||| || || ||
Sbjct 4631350 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 4631406
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| | ||||| || ||||| ||||| || || | |||||
Sbjct 4631407 AAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631451
Score = 131 bits (144), Expect = 4e-25
Identities = 164/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | || || || || ||||| ||||| || || || ||||| |||| || ||
Sbjct 4631003 CTGAGGCGCAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 4631062
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| |||||||| ||||||||||| ||||| || || | || || || || ||||||||
Sbjct 4631063 CGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCC 4631122
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
|| ||||| || || || ||| ||||||||||||||||| ||| || || |||
Sbjct 4631123 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCA 4631179
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || |||| ||||| || || | |||||
Sbjct 4631180 AGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223
Score = 131 bits (144), Expect = 4e-25
Identities = 155/209 (74%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||| || || || || ||||| || | || || | |||||||||||||||
Sbjct 4631704 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGCTG 4631763
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| || | || || || ||||||||||| || ||||| || || ||
Sbjct 4631764 CTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 4631823
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
||| || || ||||||||||| ||| || || |||||||| | ||||| ||
Sbjct 4631824 GGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 4631880
Query 195114 TGTCAAAGTTTTTACGAACACTTGCATTT 195142
|||| || || ||||| | |||||||
Sbjct 4631881 AGTCAGGGTCTTCACGAAGATCTGCATTT 4631909
Score = 127 bits (140), Expect = 5e-24
Identities = 153/207 (74%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||| || || || || ||||| |||| || || | |||||||| |||||
Sbjct 4631476 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTG 4631535
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| ||||| || || | || || || || |||||||| || ||||| || || ||
Sbjct 4631536 CTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 4631595
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
||| ||||||||||||||||| ||| || || |||||||| | ||||| ||
Sbjct 4631596 GGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 4631652
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| ||||| || || | |||||
Sbjct 4631653 AGTCAAGGTTTTCACAAAGATCTGCAT 4631679
>seq91
Length=4318309
Score = 131 bits (144), Expect = 4e-25
Identities = 157/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||| || || || || ||||| || | || || | ||| |||||
Sbjct 4012603 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 4012544
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || |||||||| ||||||||||| ||||| ||
Sbjct 4012543 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 4012484
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| ||||||||||| |||| |||
Sbjct 4012483 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTCAAGAGTAATTGTC 4012427
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 4012426 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4012395
Score = 127 bits (140), Expect = 5e-24
Identities = 164/225 (73%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || ||||| || ||||| || || || || ||||| || | || ||
Sbjct 4011704 TCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 4011645
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||| ||||| |||||||| || |||||||| || | || |||||||| ||||||||
Sbjct 4011644 GCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 4011585
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||| ||||| || || || ||| || |||||||||||||| ||| || || ||
Sbjct 4011584 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 4011528
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| | ||||| || |||| || || || || | |||||
Sbjct 4011527 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4011483
Score = 114 bits (126), Expect = 3e-20
Identities = 154/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || || || || || || ||||| || | ||||| | ||||||||
Sbjct 4012147 ACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCC 4012088
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || || ||||||||||| ||||| ||
Sbjct 4012087 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 4012028
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || || || || | |||
Sbjct 4012027 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCTAGAGTGATGGTC 4011971
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || ||||| || || || || | ||||||
Sbjct 4011970 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 4011938
Score = 113 bits (124), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||| || || || || ||||| || | ||||| | ||||||||
Sbjct 4012375 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCC 4012316
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || || ||||||||||| ||||| ||
Sbjct 4012315 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 4012256
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||||||||| || ||| || || || ||||| | |||
Sbjct 4012255 ATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTCGAGGGTGATGGTC 4012199
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 4012198 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167
Score = 104 bits (114), Expect = 5e-17
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||| || || || || ||||| || | || || | ||| |||||
Sbjct 4011919 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 4011860
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || | || || || || ||||||||||| ||||| ||
Sbjct 4011859 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 4011800
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || || ||||| | |||
Sbjct 4011799 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 4011743
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 4011742 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109269466077941
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |