Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 136 9e-27 seq91 131 4e-25 >seq12 Length=7699506 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || || || |||||||| || || || || ||||| |||| || || Sbjct 4631230 TCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 4631289 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||||||||| ||||| || || | || || || || |||||||| Sbjct 4631290 GCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCC 4631349 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || || ||| ||||||||||||||||| ||| || || || Sbjct 4631350 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 4631406 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || ||||| ||||| || || | ||||| Sbjct 4631407 AAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631451 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || ||||| ||||| || || || ||||| |||| || || Sbjct 4631003 CTGAGGCGCAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 4631062 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||||||||| ||||| || || | || || || || |||||||| Sbjct 4631063 CGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCC 4631122 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| ||||||||||||||||| ||| || || ||| Sbjct 4631123 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCA 4631179 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||||| || || | ||||| Sbjct 4631180 AGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| || | || || | ||||||||||||||| Sbjct 4631704 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGCTG 4631763 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || | || || || ||||||||||| || ||||| || || || Sbjct 4631764 CTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 4631823 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| || || ||||||||||| ||| || || |||||||| | ||||| || Sbjct 4631824 GGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 4631880 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || || ||||| | ||||||| Sbjct 4631881 AGTCAGGGTCTTCACGAAGATCTGCATTT 4631909 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| |||| || || | |||||||| ||||| Sbjct 4631476 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTG 4631535 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || | || || || || |||||||| || ||||| || || || Sbjct 4631536 CTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 4631595 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| ||||||||||||||||| ||| || || |||||||| | ||||| || Sbjct 4631596 GGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 4631652 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || || | ||||| Sbjct 4631653 AGTCAAGGTTTTCACAAAGATCTGCAT 4631679 >seq91 Length=4318309 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| || | || || | ||| ||||| Sbjct 4012603 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 4012544 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||| ||||| || Sbjct 4012543 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 4012484 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||||||||||| |||| ||| Sbjct 4012483 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTCAAGAGTAATTGTC 4012427 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 4012426 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4012395 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || ||||| || | || || Sbjct 4011704 TCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 4011645 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || |||||||| || | || |||||||| |||||||| Sbjct 4011644 GCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 4011585 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || |||||||||||||| ||| || || || Sbjct 4011584 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 4011528 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || |||| || || || || | ||||| Sbjct 4011527 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4011483 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || || || || || || ||||| || | ||||| | |||||||| Sbjct 4012147 ACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCC 4012088 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || || || ||||||||||| ||||| || Sbjct 4012087 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 4012028 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || || || | ||| Sbjct 4012027 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCTAGAGTGATGGTC 4011971 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || || || | |||||| Sbjct 4011970 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 4011938 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| || | ||||| | |||||||| Sbjct 4012375 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCC 4012316 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || || || ||||||||||| ||||| || Sbjct 4012315 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 4012256 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||||||||| || ||| || || || ||||| | ||| Sbjct 4012255 ATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTCGAGGGTGATGGTC 4012199 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 4012198 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| || | || || | ||| ||||| Sbjct 4011919 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 4011860 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || || || || ||||||||||| ||||| || Sbjct 4011859 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 4011800 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 4011799 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 4011743 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 4011742 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109269466077941