Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq366 140 3e-27 >seq366 Length=2320313 Score = 140 bits (154), Expect = 3e-27 Identities = 119/147 (81%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 1131363 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1131304 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||||| || |||||||| || |||||||| || || || ||| Sbjct 1131303 AAAGATGCTGGAACCATTGCTGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCT 1131244 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| |||| ||||| || || ||| Sbjct 1131243 GCTGCGATTGCCTATGGTCTGGACAAA 1131217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028506804457270