Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq682 113 4e-20
seq810 91.5 1e-13
>seq682
Length=840739
Score = 113 bits (124), Expect = 4e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| |||||||| || |||||||||||||| || || || ||||||| ||
Sbjct 497122 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 497181
Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
||||| || ||| |||| ||| ||| ||| |||| || || | || || || || |
Sbjct 497182 CCCCTCCTCTCTGCTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 497240
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||| ||||| ||||| || | ||||||||||||| ||||| || ||
Sbjct 497241 CCCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 497289
>seq810
Length=1044949
Score = 91.5 bits (100), Expect = 1e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 112105 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 112164
||||| |||||||| |||| || ||||||||| | | ||| | || ||| || || |||
Sbjct 263772 AGCTCTCTGCTGAGCACTATATTAATCCTGTCTTTTAAAGGACGATGCTTCTCAGGAATG 263831
Query 112165 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
|||||||| || ||||||||||||| ||| | ||||| || |||
Sbjct 263832 GAGAACCAGGTTTTTCTACCCATTACCACTGCATTCTGTTTACCT 263876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408543283057079
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |