Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq91 105 5e-18
>seq91
Length=4318309
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||||||||| || || || ||||| || | | ||| | |||| |||| |||
Sbjct 4012141 TGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGC 4012082
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| | ||| |||||||| ||||||||||| || || || || ||
Sbjct 4012081 TTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 4012022
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | || || || ||||||| || ||||| ||
Sbjct 4012021 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTC 4011962
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| || || ||||| ||||||||
Sbjct 4011961 AAGGTCTTCACAAAGATCTGCAT 4011939
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| ||||| || || || ||||| || | | || | | || |||| |||
Sbjct 4012597 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 4012538
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| |||| | ||| || || || ||||||||||| || || || || ||
Sbjct 4012537 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 4012478
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | |||||||||||||| | || || || ||
Sbjct 4012477 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTC 4012418
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || ||||| |||||||||
Sbjct 4012417 AGGGTCTTCACAAAGATCTGCATG 4012394
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| ||||| || || || ||||| || | | ||| | |||| |||| |||
Sbjct 4012369 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGC 4012310
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| | ||| |||||||| ||||||||||| || || || || ||
Sbjct 4012309 TTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 4012250
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | || ||| | || || || || |||| || ||||| ||
Sbjct 4012249 GCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 4012190
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 4012189 AGGGTCTTGACAAAAATCTGCAT 4012167
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||| || | || | || | || ||||| ||||| || || || ||||| || |
Sbjct 4011939 TTCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 4011880
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| || | | || |||| ||||| || ||||| |||| | ||| ||||| || |
Sbjct 4011879 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGG 4011820
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||||||||| || || || || || || ||| | || | |||||| | || |
Sbjct 4011819 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 4011760
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || || |||| || ||||| || | || || ||||| ||||||||
Sbjct 4011759 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396206327237511
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |