Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq12 98.7 8e-16
>seq12
Length=7699506
Score = 98.7 bits (108), Expect = 8e-16
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | |||||| || || ||| || || || || ||||| || ||
Sbjct 4631452 GCCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 4631511
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | ||| | || |||| ||||||||| || || ||||| | ||| ||||| | |||
Sbjct 4631512 CAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGG 4631571
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCC 48716
|| |||||||||||| ||||| || || | | || | | | || | |||
Sbjct 4631572 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCA-ATGGTGTCACTGGGCTCA 4631629
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| | || || || || || ||||| ||||| ||||| ||||||||
Sbjct 4631630 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631679
Score = 95.1 bits (104), Expect = 9e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || |||| ||| | ||| || || ||| || || || ||||| || ||
Sbjct 4630997 CCACCCCTGAGGCGCAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 4631056
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || |||| ||||||||| || || ||||| | ||| ||||| | ||||
Sbjct 4631057 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGA 4631116
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717
| |||||||||||| ||||| || || | | || | | | || | ||| |
Sbjct 4631117 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCA-ATGGTGTCACTGGGCTCAA 4631174
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| | || || || || || |||| ||||| ||||| |||||||||
Sbjct 4631175 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCATC 4631224
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || |||| ||| | ||| || ||| || || || || ||||| || ||
Sbjct 4631225 CCTCCTCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 4631284
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || |||| ||||||||| || || ||||| | ||| ||||| | ||||
Sbjct 4631285 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGA 4631344
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717
| |||||||||||| ||||| || || | | || | | | || | ||| |
Sbjct 4631345 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCA-ATGGTGTCACTGGGCTCAA 4631402
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| | || || || || || ||||| ||||| ||||| ||||||||
Sbjct 4631403 CCTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631451
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | |||||| || || ||| || || || || ||||| |||||
Sbjct 4631680 GCCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 4631739
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || || | ||||||||| || || ||||| | ||| ||||| | ||
Sbjct 4631740 CAGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGG 4631799
Query 48659 AACGCCCTCCTTGTC 48673
|| ||||||||||||
Sbjct 4631800 AATGCCCTCCTTGTC 4631814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380868317331129
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |