Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq266 114 2e-20 seq243 84.2 4e-11 >seq266 Length=585698 Score = 114 bits (126), Expect = 2e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||| Sbjct 268199 GTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 268140 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||||| | ||| | || ||||| |||||||| || | |||||||| ||| Sbjct 268139 -TTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTG 268081 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 ||| | | || | |||||| | | |||||| ||||||| | |||| Sbjct 268080 CGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGGACA 268029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| || || |||| ||| | |||||| || |||||| ||||||||||| Sbjct 270430 CCTTTGCTGACCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCG 270371 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | ||| || ||||||| ||||| ||||| || | | |||||| || | Sbjct 270370 CAGCTGGCTTCCAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGGCGCTGG 270311 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | ||| || | ||| | ||| | || ||||| ||||| || Sbjct 270310 GCCTCGGGGCTCTCGAACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACG 270251 Query 213321 CCGATGCCGATGGGTCTGTG 213340 |||||||||||||| | ||| Sbjct 270250 CCGATGCCGATGGGGCGGTG 270231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || ||||| ||||| | ||| | ||| |||||||||||||| Sbjct 271827 TACCTGGAACTCCCCGGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 271768 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||||||||| ||||| ||||| || ||| ||| ||||||||||| | || || || Sbjct 271767 GGACTCGTTGTTGCCCAGGATCTGCGCGGTGGAGGCGGTGGGCATGGGGGACAGGAGCAG 271708 Query 213035 ACTGTTCCTCACTCC 213049 |||||||| || || Sbjct 271707 GCTGTTCCTGACGCC 271693 Score = 89.7 bits (98), Expect = 1e-12 Identities = 101/130 (78%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 ||| |||||||| |||||||| ||||| | | ||||| || ||||| | | ||| | Sbjct 274806 GTTGAGGGACTGGCTCTGGTCGATGAAGGCTCCTCTGTCCGCTGCCATCTTCAGGATGGT 274747 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CG 212813 || ||||||||| ||||||||| |||||| | | | || |||||||| ||||| | || Sbjct 274746 CT-TCTGGGAGATCTCCCACACCGTCTTGTACAGCTGCTTCAGGTCCTC-GGGAATCTCG 274689 Query 212814 GGGATGTTCT 212823 |||||||||| Sbjct 274688 GGGATGTTCT 274679 >seq243 Length=25666195 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||||||||| |||| || || ||| |||||||| | ||||| | || Sbjct 20270010 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 20269951 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| ||||||| || ||||||||||| |||||||| || ||||| || || || || Sbjct 20269950 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAGC 20269892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931359034200320