Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq266 114 2e-20
seq243 84.2 4e-11
>seq266
Length=585698
Score = 114 bits (126), Expect = 2e-20
Identities = 130/172 (76%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 268199 GTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 268140
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| ||||| | ||| | || ||||| |||||||| || | |||||||| |||
Sbjct 268139 -TTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTG 268081
Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698
||| | | || | |||||| | | |||||| ||||||| | ||||
Sbjct 268080 CGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGGACA 268029
Score = 95.1 bits (104), Expect = 2e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|||||||| || || |||| ||| | |||||| || |||||| |||||||||||
Sbjct 270430 CCTTTGCTGACCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCG 270371
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| || | ||| || ||||||| ||||| ||||| || | | |||||| || |
Sbjct 270370 CAGCTGGCTTCCAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGGCGCTGG 270311
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
||||| ||| | ||| || | ||| | ||| | || ||||| ||||| ||
Sbjct 270310 GCCTCGGGGCTCTCGAACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACG 270251
Query 213321 CCGATGCCGATGGGTCTGTG 213340
|||||||||||||| | |||
Sbjct 270250 CCGATGCCGATGGGGCGGTG 270231
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974
|| |||||| || || ||||| ||||| | ||| | ||| ||||||||||||||
Sbjct 271827 TACCTGGAACTCCCCGGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 271768
Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034
| ||||||||| ||||| ||||| || ||| ||| ||||||||||| | || || ||
Sbjct 271767 GGACTCGTTGTTGCCCAGGATCTGCGCGGTGGAGGCGGTGGGCATGGGGGACAGGAGCAG 271708
Query 213035 ACTGTTCCTCACTCC 213049
|||||||| || ||
Sbjct 271707 GCTGTTCCTGACGCC 271693
Score = 89.7 bits (98), Expect = 1e-12
Identities = 101/130 (78%), Gaps = 4/130 (3%)
Strand=Plus/Minus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754
||| |||||||| |||||||| ||||| | | ||||| || ||||| | | ||| |
Sbjct 274806 GTTGAGGGACTGGCTCTGGTCGATGAAGGCTCCTCTGTCCGCTGCCATCTTCAGGATGGT 274747
Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CG 212813
|| ||||||||| ||||||||| |||||| | | | || |||||||| ||||| | ||
Sbjct 274746 CT-TCTGGGAGATCTCCCACACCGTCTTGTACAGCTGCTTCAGGTCCTC-GGGAATCTCG 274689
Query 212814 GGGATGTTCT 212823
||||||||||
Sbjct 274688 GGGATGTTCT 274679
>seq243
Length=25666195
Score = 84.2 bits (92), Expect = 4e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
|| || | ||||||||| |||| || || ||| |||||||| | ||||| | ||
Sbjct 20270010 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 20269951
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
||||| ||||||| || ||||||||||| |||||||| || ||||| || || || ||
Sbjct 20269950 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAGC 20269892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931359034200320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |