Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq266 102 2e-16 >seq266 Length=585698 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || |||| || ||||||||| || || ||||| || || || || || Sbjct 266884 CTGGTTGGTTTCAACCCGCTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGGTC 266825 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||||||| || |||| ||| ||| || | |||||||| ||||| Sbjct 266824 TCTGGCTCGCTGCTCCTCCTTCCCCGTGTTCTTCTTCAAGTCGAGGAACTCAAAGATGTC 266765 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| ||||||| || Sbjct 266764 CAGATGCCACGGCTCCAGGTAGATGGCGAAAGCCCCGGGTCTCT 266721 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||| ||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 268216 CCACCTCGTCTTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 268157 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || |||||| ||| ||||| ||||| ||||| | || Sbjct 268156 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCG 268097 Query 221850 CGCCAGTCTCC 221860 ||| |||||| Sbjct 268096 TGCCGGTCTCC 268086 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| || || ||||| ||||| | ||| | ||| ||| | || |||||| Sbjct 271826 ACCTGGAACTCCCCGGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATG 271767 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| ||||||||||||||| | || ||||| Sbjct 271766 GACTCGTTGTTGCCCAGGATCTGCGCGGTGGAGGCGGTGGGCATGGGGGACAGGAGCAGG 271707 Query 221243 CTGTT 221247 ||||| Sbjct 271706 CTGTT 271702 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 |||||| || ||||| | ||||||||| || | | |||| | |||| | || Sbjct 270421 ACCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCGCA-GCTGGC 270363 Query 221417 GTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGG 221475 || || || ||| ||| |||||||||||||| || |||||| | || ||||||||| Sbjct 270362 TTCCAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGGCGCTGGGCCTCGGG 270303 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| || |||| || ||| |||||||||| ||||| || ||||| || Sbjct 270302 GCTCTCGAACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCC 270243 Query 221536 GATGGGCCTGTGTCTCCTGTTGGA 221559 |||||| | ||| | ||||||||| Sbjct 270242 GATGGGGCGGTGGCGCCTGTTGGA 270219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928671535613120