Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq294 230 3e-55 seq510 161 1e-34 >seq294 Length=553464 Score = 230 bits (254), Expect = 3e-55 Identities = 602/910 (66%), Gaps = 9/910 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || |||||| | Sbjct 272851 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACTTCAGTGTCGAACT 272910 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| ||||| | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 272911 TATTAGCGAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 272967 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | ||| | Sbjct 272968 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 273027 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||||| ||||||||||||| ||||||||||| | || | ||| || || ||||| Sbjct 273028 TACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCGTTCATATCAGAAACGTCGT 273087 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| || | ||| ||||| || || | || || | ||| | || ||||||| Sbjct 273088 ACTTGTCACTCGAAGAAACCGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 273147 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTG 160403 ||| || || |||||||| || || || | ||| || ||||||| || | ||| ||| Sbjct 273148 GGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT-TCAGTATTTTGCTG 273206 Query 160404 -TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | || |||| || | |||| | || ||||| || || || || || || Sbjct 273207 CTTTCTAAG-ACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAA 273265 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | || | | ||| || | |||||| || ||||| | || | Sbjct 273266 AACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTCTACCATC 273325 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 273326 AATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTC 273385 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 | |||||| | || | || | ||| | | || || || || |||| ||||| | Sbjct 273386 CAAACTGTTTTCGCCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTAT 273445 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | || || | |||||| | || ||||| || | || || || Sbjct 273446 AGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTGTAGAG 273505 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||| ||||| | |||||| || || || || || | || Sbjct 273506 ATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGACGCATATACAACACTTTC 273565 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| ||||| |||||||| | |||||| ||| | ||| || Sbjct 273566 TAACTGGCTGGAAATAAAGACATTATCAAAACACGAGGCTATTCCCTTCACAG-CAGCAA 273624 Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | || | | |||| ||| || || | ||| || | |||||||| || |||| Sbjct 273625 AAAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGA 273684 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | | || || | || |||||||| || || || |||| | ||| || ||||| || | Sbjct 273685 TTGATCTTAGAAGTCTATCGAACATGTCAATTTTGTGATAAACCACTATCGAGTAAGCAA 273744 Query 160942 TCGGAAACTC 160951 | ||||| || Sbjct 273745 TTGGAAATTC 273754 >seq510 Length=5355126 Score = 161 bits (178), Expect = 1e-34 Identities = 607/940 (65%), Gaps = 34/940 (4%) Strand=Plus/Plus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||||||||| | || || || || |||| |||| |||| ||| |||||| Sbjct 354032 CTGTGTCGCAGGTACTCCTCGAGGCACTGGATGGCGGCATCGTCCACGAGGGGGTCGAAC 354091 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || |||||||| | ||| || |||||| ||||||| || | |||| | Sbjct 354092 TTGTTGGCCAAGAGATGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCGCCCCGTAG 354148 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 354149 ATGCAGACGGCGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCACCCTTGCTGGTG 354208 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || | || | |||||| ||| | | Sbjct 354209 TCGCCCTCCATGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGG 354268 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| | ||| || || || |||||||| || | ||||||||||| Sbjct 354269 AACTTGTCACTCTGGGGCATGGCGCCTGGCACACCGGGCATGCGGTTGAGGGTGGCCCAG 354328 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||||| |||||||| |||||||| | ||| || | ||||| | | | | Sbjct 354329 ACATGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGTTGCACTGTGGGG 354388 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | |||||| || ||| | || || |||| ||| |||||||| | ||| Sbjct 354389 TTCTCGAAAACGTGCTGCACAAAGGCCCGCGTGACCACAATGTATGCGCTGCCCGTGAAC 354448 Query 160464 ATCGG-----TAT-GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACT 160517 || || | | |||| ||||| | ||| || || |||| || | | Sbjct 354449 ATGGGGGAGTTGTGGGGTGGTGGCGGTTTCTCTGTG-GTTGTCCGG-----GAGATGA-- 354500 Query 160518 CCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-TC 160576 ||| ||| ||| | | | ||| | | |||| || | | || | || Sbjct 354501 -ACTTCCCCACTTTGTGGTGGTACCGCCAGCGCTGCTGCTTG-GCAGCTGAGGGCTTCTC 354558 Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636 | ||| | ||||| || | ||| |||||| ||||||||| ||| || Sbjct 354559 AGACTCCATGCTGTTCTGCCCCTGCAGCACTTTCAGGGAACGGACGATCTCGGCGTTGGT 354618 Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG-- 160694 ||||| || || ||||| || || ||| | | ||| | ||| || || |||| Sbjct 354619 CTTGATGGGGAAATCGGTGCCACAGGTGTTGAGGATGTATTGCCA---CG-GCACAGGGC 354674 Query 160695 --TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACA 160752 | |||||||| |||||| || | || ||||||| ||| |||||| || || | Sbjct 354675 TCTGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGA 354734 Query 160753 CTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCA 160812 | || || || || || ||||||||||| || ||| || | |||| || || Sbjct 354735 CCACATTTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTGCGATGGCCCGCA 354794 Query 160813 CCGCCAGAAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 | ||| ||| | | || | ||| ||| | ||| ||||| || | ||||| Sbjct 354795 CGGCCTCCTGGAA-AGC--GGCCGGGGACTTGTTGTCAATGTGAACGCAGTAGACGTTCT 354851 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || ||||||| || || || | || ||| ||||||||||| || | ||||| || | Sbjct 354852 GGGGAGCGTAGAGGGACCGCAGGAGCCGCTCAAACATCTCTATTTTGTCGTGGATGACCA 354911 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | |||||||| || ||||| || | |||||| | ||||| Sbjct 354912 TGGAGTAGGCGATGGGAAAGTCTGCCTCCTCCTGGCTCAG 354951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577111526973480