Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq294 230 3e-55
seq510 161 1e-34
>seq294
Length=553464
Score = 230 bits (254), Expect = 3e-55
Identities = 602/910 (66%), Gaps = 9/910 (1%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| ||||| || || || |||||| || |||||| |
Sbjct 272851 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACTTCAGTGTCGAACT 272910
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| ||||| | ||||| ||| |||| ||||||| || |||||| ||| || |
Sbjct 272911 TATTAGCGAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 272967
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || | ||| || || |||| || ||||| | || ||||| | ||| |
Sbjct 272968 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 273027
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
|||||| ||||||||||||| ||||||||||| | || | ||| || || |||||
Sbjct 273028 TACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCGTTCATATCAGAAACGTCGT 273087
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| |||| || | ||| ||||| || || | || || | ||| | || |||||||
Sbjct 273088 ACTTGTCACTCGAAGAAACCGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 273147
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTG 160403
||| || || |||||||| || || || | ||| || ||||||| || | ||| |||
Sbjct 273148 GGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT-TCAGTATTTTGCTG 273206
Query 160404 -TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462
| | || |||| || | |||| | || ||||| || || || || || ||
Sbjct 273207 CTTTCTAAG-ACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAA 273265
Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522
| || | | ||| || | |||||| || ||||| | || |
Sbjct 273266 AACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTCTACCATC 273325
Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582
| | | | || | || |||||||| || || | ||||| ||| || ||
Sbjct 273326 AATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTC 273385
Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642
| |||||| | || | || | ||| | | || || || || |||| ||||| |
Sbjct 273386 CAAACTGTTTTCGCCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTAT 273445
Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702
|||||||| | || || | |||||| | || ||||| || | || || ||
Sbjct 273446 AGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTGTAGAG 273505
Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762
|| ||||||| ||||| ||||| ||||| | |||||| || || || || || | ||
Sbjct 273506 ATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGACGCATATACAACACTTTC 273565
Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822
|| | |||| | |||||| ||||| |||||||| | |||||| ||| | ||| ||
Sbjct 273566 TAACTGGCTGGAAATAAAGACATTATCAAAACACGAGGCTATTCCCTTCACAG-CAGCAA 273624
Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881
|| | || | | |||| ||| || || | ||| || | |||||||| || ||||
Sbjct 273625 AAAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGA 273684
Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941
| | || || | || |||||||| || || || |||| | ||| || ||||| || |
Sbjct 273685 TTGATCTTAGAAGTCTATCGAACATGTCAATTTTGTGATAAACCACTATCGAGTAAGCAA 273744
Query 160942 TCGGAAACTC 160951
| ||||| ||
Sbjct 273745 TTGGAAATTC 273754
>seq510
Length=5355126
Score = 161 bits (178), Expect = 1e-34
Identities = 607/940 (65%), Gaps = 34/940 (4%)
Strand=Plus/Plus
Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103
||||||||||| | || || || || |||| |||| |||| ||| ||||||
Sbjct 354032 CTGTGTCGCAGGTACTCCTCGAGGCACTGGATGGCGGCATCGTCCACGAGGGGGTCGAAC 354091
Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163
|| || || || |||||||| | ||| || |||||| ||||||| || | |||| |
Sbjct 354092 TTGTTGGCCAAGAGATGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCGCCCCGTAG 354148
Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223
| |||||||| || |||| |||| |||| |||||||| | || || || |
Sbjct 354149 ATGCAGACGGCGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCACCCTTGCTGGTG 354208
Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283
|| || || |||||||||||| || | | || | || | |||||| ||| | |
Sbjct 354209 TCGCCCTCCATGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGG 354268
Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
| |||| || |||| | ||| || || || |||||||| || | |||||||||||
Sbjct 354269 AACTTGTCACTCTGGGGCATGGCGCCTGGCACACCGGGCATGCGGTTGAGGGTGGCCCAG 354328
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403
| || ||||| |||||||| |||||||| | ||| || | ||||| | | | |
Sbjct 354329 ACATGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGTTGCACTGTGGGG 354388
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| | | |||||| || ||| | || || |||| ||| |||||||| | |||
Sbjct 354389 TTCTCGAAAACGTGCTGCACAAAGGCCCGCGTGACCACAATGTATGCGCTGCCCGTGAAC 354448
Query 160464 ATCGG-----TAT-GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACT 160517
|| || | | |||| ||||| | ||| || || |||| || | |
Sbjct 354449 ATGGGGGAGTTGTGGGGTGGTGGCGGTTTCTCTGTG-GTTGTCCGG-----GAGATGA-- 354500
Query 160518 CCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-TC 160576
||| ||| ||| | | | ||| | | |||| || | | || | ||
Sbjct 354501 -ACTTCCCCACTTTGTGGTGGTACCGCCAGCGCTGCTGCTTG-GCAGCTGAGGGCTTCTC 354558
Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636
| ||| | ||||| || | ||| |||||| ||||||||| ||| ||
Sbjct 354559 AGACTCCATGCTGTTCTGCCCCTGCAGCACTTTCAGGGAACGGACGATCTCGGCGTTGGT 354618
Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG-- 160694
||||| || || ||||| || || ||| | | ||| | ||| || || ||||
Sbjct 354619 CTTGATGGGGAAATCGGTGCCACAGGTGTTGAGGATGTATTGCCA---CG-GCACAGGGC 354674
Query 160695 --TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACA 160752
| |||||||| |||||| || | || ||||||| ||| |||||| || || |
Sbjct 354675 TCTGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGA 354734
Query 160753 CTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCA 160812
| || || || || || ||||||||||| || ||| || | |||| || ||
Sbjct 354735 CCACATTTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTGCGATGGCCCGCA 354794
Query 160813 CCGCCAGAAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869
| ||| ||| | | || | ||| ||| | ||| ||||| || | |||||
Sbjct 354795 CGGCCTCCTGGAA-AGC--GGCCGGGGACTTGTTGTCAATGTGAACGCAGTAGACGTTCT 354851
Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929
| || ||||||| || || || | || ||| ||||||||||| || | ||||| || |
Sbjct 354852 GGGGAGCGTAGAGGGACCGCAGGAGCCGCTCAAACATCTCTATTTTGTCGTGGATGACCA 354911
Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969
| |||||||| || ||||| || | |||||| | |||||
Sbjct 354912 TGGAGTAGGCGATGGGAAAGTCTGCCTCCTCCTGGCTCAG 354951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577111526973480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |