Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq223 295 9e-75 seq12 190 3e-43 seq91 179 5e-40 seq366 165 1e-35 seq714 98.7 1e-15 seq685 87.8 2e-12 seq10037 86.0 8e-12 seq1936 84.2 3e-11 >seq223 Length=4343944 Score = 295 bits (326), Expect = 9e-75 Identities = 993/1532 (65%), Gaps = 27/1532 (2%) Strand=Plus/Plus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 3135555 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACT 3135614 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| |||| ||||| || || || ||| || |||||||| | ||| Sbjct 3135615 GATACCGAGCGCCTCATTGGGGATGCTGCCAAGAACCAGGTGGCAATGAACCCCACCAAC 3135674 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| ||||| ||||||| | || | || || | Sbjct 3135675 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 3135734 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| | ||| | | || || || || | ||||| | | | | Sbjct 3135735 GACATGAAGCATTGGCCCTTCCGTGTGGTGAA---TGAGGGCGGCAAGCCCAAGGTGCAG 3135791 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCG-TCTATGGTGTT 195657 || || | | || |||| ||| | || ||||| || | | | || |||||| | Sbjct 3135792 GTGGAGTACAAGGGCGAGATGAAG-ACCTTCTTCCCGGAGGAGATCAGCTCCATGGTGCT 3135850 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||||||||||||| |||||| | | |||| | || | |||| || | Sbjct 3135851 TACCAAGATGAAGGAGATTGCGGAGGCCTATCTGGGGCGCAAGGTACAGAATGCTGTCAT 3135910 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || ||||||||||||| ||| || || || ||||| || || || |||| | || Sbjct 3135911 CACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 3135970 Query 195778 TGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | || || || ||| | | |||||||| || || ||||| ||||| || || |||| Sbjct 3135971 CACTGGCCTTAA-TGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATG 3136029 Query 195837 GTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | |||||||||| | || | || || ||||| | |||||||| | || | Sbjct 3136030 GCTTGGACAAGAAAGGTACCCGGGCTGGTGAGAAGAATGTGCTCATCTTTGACTTGGGAG 3136089 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | || || |||||||| || | || | ||||| | ||| || || || || ||| | | Sbjct 3136090 GGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTCAAGTCCA 3136149 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGT 196010 | |||||||| || ||||| ||||| || || || || || | | ||||| Sbjct 3136150 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTG 3136209 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || || ||| || ||| | ||| || ||| |||| || | || | | | Sbjct 3136210 TGGAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGC 3136269 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGG 196130 |||| | || || ||||| | || || || || ||| ||| | | ||| | | Sbjct 3136270 GGCTGCGTACGGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCTTCCACACAAGCTAGCA 3136329 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||||||||| || | | || || || |||||||| || | || || ||||| || | Sbjct 3136330 TTGAGATTGACTCCCTCTACGAGGGCATCGACTTCTACACCTCCATAACTCGTGCCCGCT 3136389 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 |||| ||| | || | ||| | || | |||| || || || | | || | Sbjct 3136390 TTGAGGAGCTCAATGCCGATCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCCCTGC 3136449 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||| || ||| | || ||| || | | || || || || ||||| || || || | Sbjct 3136450 GTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCACTC 3136509 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 |||| || ||||| ||| | |||| |||||||||| |||||| | ||||| | Sbjct 3136510 GTATCCCAAAGATCCAAAAACTGCTACAGGACTTCTTCAATGGTAAAGAGCTCAACAAGA 3136569 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 ||||| || ||||| || ||||||||||| || || || || |||||||| || | | Sbjct 3136570 GCATCAATCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTACAAGCTGCTATCCT-TATG 3136628 Query 196431 GTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 | ||||| | | || || || ||||| || || | ||||| | || | |||| Sbjct 3136629 --GGAGACAAGTCTGAGAATGTGCAGGATCTGCTCCTGTTGGATGTCACCCCTCTGTCCC 3136686 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 |||| | || ||||| || || || ||||| | || | | ||||| || |||| Sbjct 3136687 TGGGCATCGAGACAGCTGGGGGAGTGATGACAGCTCTCATCAAGCGCAACACCACCATTC 3136746 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATT 196606 | || || | || ||| | || || || || || || | || | || | | Sbjct 3136747 CCACCAAACAAACCCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCCTGGTC 3136805 Query 196607 CAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663 || || ||||| | |||| ||| || |||| || ||| | | || || | || Sbjct 3136806 CAGGTGTATGAGGGTGAGAGGGCT---ATGACAAAAGACAACAACTTGCTGGGCAAGTTT 3136862 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | ||||| || || | |||||| | || ||||| ||||| | || || || Sbjct 3136863 GACCTAACGGGCATCCCCCCAGCACCCCGTGGGGTTCCCCAGATCGAGGTCACTTTTGAC 3136922 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 || || || ||||| || || || |||| |||| ||||||| | || || | Sbjct 3136923 ATCGATGCCAATGGTATCCTGAATGTCAGCGCTGTGGACAAGAGCACGGGTAAGGAGAAC 3136982 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 ||||| || |||||||||||||| || ||| ||||| || || || |||||||| Sbjct 3136983 AAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATCGACCGTATGGTG 3137042 Query 196844 CAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||||| || || || |||| | ||| || || Sbjct 3137043 CAAGAAGCAGAGAAATACAAAGCAGAGGATGA 3137074 >seq12 Length=7699506 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||||||||| || || || || |||||||| ||||||||| | Sbjct 4631223 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631164 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || ||||| |||||||| || |||||| Sbjct 4631163 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 4631104 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| |||||||| ||||| |||||||| || ||||| | || |||||| Sbjct 4631103 CAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 4631044 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||||||||| || || || || | || |||||||| Sbjct 4631043 ATCCAGAAGGAGTCTACTCTGCATCTCGTGCTGCGCCTCAGGGGTGGT 4630996 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||||||| | ||||| || || |||||||| ||||||||| | Sbjct 4631679 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631620 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || ||||| |||||||| || |||||| Sbjct 4631619 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 4631560 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| |||||||| ||||| |||||||| || ||||| | || |||||| Sbjct 4631559 CAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 4631500 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || ||| | || ||| | || ||||||| Sbjct 4631499 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTACGTCTCAGGGGTGG 4631453 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||||||| | ||||| || || |||||||| ||||||||| | Sbjct 4631451 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631392 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || ||||| |||||||| || |||||| Sbjct 4631391 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 4631332 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| |||||||| ||||| |||||||| || ||||| | || |||||| Sbjct 4631331 CAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 4631272 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || ||||| || || || || Sbjct 4631271 ATCCAGAAGGAATCCACTCTCCATCTCGTGCT 4631240 >seq91 Length=4318309 Score = 179 bits (198), Expect = 5e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||| | Sbjct 4011711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4011770 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| || |||||| Sbjct 4011771 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4011830 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||||||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 4011831 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011890 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||||| || || Sbjct 4011891 ATCCAGAAGGAATCCACCCTGCACCTGGTGCT 4011922 Score = 170 bits (188), Expect = 3e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | ||||| || || ||||| || ||||||||| | Sbjct 4011939 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAGT 4011998 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| ||||||||| Sbjct 4011999 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012058 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || ||||| || ||||| |||||||| ||||| || |||| |||||| Sbjct 4012059 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012118 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| ||||| || ||||| || || Sbjct 4012119 ATCCAGAAGGAATCTACCCTGCACCTGGTGCT 4012150 Score = 170 bits (188), Expect = 3e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || ||||| ||||| || || |||||||||||||||||| | Sbjct 4012167 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4012226 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || |||||||| || || |||||||||||||| ||||||||| Sbjct 4012227 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012286 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || ||||| || ||||| |||||||| ||||| || |||| |||||| Sbjct 4012287 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012346 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || ||||| || || | || ||||||| Sbjct 4012347 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 4012393 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| ||||| || || |||||||| ||||||||| | Sbjct 4011483 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4011542 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| || || ||| Sbjct 4011543 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4011602 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || ||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 4011603 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011662 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||||| || || Sbjct 4011663 ATCCAGAAGGAATCCACCCTGCACCTGGTGCT 4011694 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || || || || || || ||| | Sbjct 4012395 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACAATTACTCTTGAAGTGGAGCCCAGT 4012454 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| || || ||| Sbjct 4012455 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4012514 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 4012515 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4012574 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || ||||| || || | || ||||||| Sbjct 4012575 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 4012621 >seq366 Length=2320313 Score = 165 bits (182), Expect = 1e-35 Identities = 358/533 (67%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 || ||||| || || ||||| || |||||||| || |||| | ||||||| ||| || Sbjct 1131104 ATTTTTGACCTTGGAGGTGGCACCTTTGATGTGTCTATTCTGACGATTGAAGATGGCATC 1131045 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || || || | ||||| ||||| ||||| | ||||| ||||| ||||| || Sbjct 1131044 TTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTCGACAACCGC 1130985 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || | ||| ||| || ||| | |||||||| || ||| || Sbjct 1130984 ATGGTCAACCACTTCATCGCTGAATTCAAGCGCAAGCACAAGAAAGACATCACTGAGAAC 1130925 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 || || ||||||| || | ||||| || || |||||||| || ||||| || || Sbjct 1130924 AAGAGAGCCGTTCGTCGCCTCCGCACTGCCTGCGAGCGTGCCAAGCGCACTCTGTCCTCC 1130865 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | || | | |||| |||||||| | | ||| || || |||||||| || | Sbjct 1130864 AGCACGCAGGCCAGCATTGAAATTGATTCTCTCTATGAGGGGATCGACTTCTACACCTCC 1130805 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 |||||| | || || ||||||||| | ||| | || |||| | |||| || Sbjct 1130804 ATTACCAGAGCTCGCTTTGAAGAGCTGAACGCCGACCTGTTCCGCGGCACCCTGGACCCC 1130745 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || || | | || || || || ||| | || ||||| || | | || || || || Sbjct 1130744 GTGGAGAAGGCCCTGCGGGATGCCAAGCTTGACAAGTCGCAGATCCACGACATCGTGCTG 1130685 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTT-TCTAGC--TTCTTCAAT 196351 || || || || || ||||| || ||||| || || |||| | || ||||||||| Sbjct 1130684 GTTGGTGGGTCTACTCGTATCCCAAAGATCCA---GAAGCTTCTGCAGGATTTCTTCAAT 1130628 Query 196352 AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| | ||||| | || || || |||||||| || ||||||||||| Sbjct 1130627 GGCAAAGAGCTGAACAAGAGCATTAATCCTGATGAAGCTGTGGCTTATGGTGC 1130575 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| ||||| || | Sbjct 1131356 ATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 1131297 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | ||||| || || || ||| |||||||||| || |||||||| ||||| | Sbjct 1131296 CTGGAACCATTGCTGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCTGCTGCGA 1131237 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| |||||||||||||| || Sbjct 1131236 TTGCCTATGGTCTGGACAAAAA 1131215 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || |||||||||||||| | | || | ||||| ||| | | || || | || || Sbjct 1129784 CAGGTCTATGAAGGAGAACG-TGCAATGACTAAGGACAACAACTTGCTGGGCAAGTTTGA 1129726 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 |||| || ||||| |||| ||||||||||| || |||||| | || ||||||||| Sbjct 1129725 GCTGACCGGTATTCCCCCTGCCCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATAT 1129666 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 || || || || || || || || | |||| ||| ||| ||||||| | || Sbjct 1129665 CGATGCCAACGGCATCCTCAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAA 1129606 Query 196786 GATTGTGATTACCAATGACAAGGG 196809 ||| ||||| || |||||||| Sbjct 1129605 GATCACAATTACAAACGACAAGGG 1129582 >seq714 Length=1871296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| ||||||||||| || ||||| ||||||||||| Sbjct 363566 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGGAAGCAGCTGGAAGATGGACG 363507 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| |||||| ||||||| Sbjct 363506 CACGCTGTCTGACTACAACATTCAAAA 363480 >seq685 Length=1810514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||| || || ||||| |||||||||| ||| ||| | || | | | Sbjct 827313 AACGGCCGCTGCCATCGCCTATGGACTGGACAAGAGAGAGGGCGAGAAGAACATCCTCGT 827372 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | || || | |||||||| || ||||||||||| || |||| ||||| ||| | Sbjct 827373 GTTC---GACTTGGGTGGTGGAACTTTTGATGTCTCCCTGCTCACAATTGACAATGGAGT 827429 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||| ||||| || ||||| ||||| || || Sbjct 827430 CTTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 827483 >seq10037 Length=433 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || |||||||||||||| | | || | ||||| ||| | | || || | || || Sbjct 109 CAGGTCTATGAAGGAGAACG-TGCAATGACTAAGGACAACAACTTGCTGGGCAAGTTTGA 167 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 |||| || ||||| |||| ||||||||||| || |||||| | || ||||||||| Sbjct 168 GCTGACCGGTATTCCCCCTGCCCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATAT 227 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 || || || || || || || || | |||| ||| ||| ||||||| | || Sbjct 228 CGATGCCAACGGCATCCTCAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAA 287 Query 196786 GATTGTGATTACCAATGACAAGGG 196809 ||| ||||| || |||||||| Sbjct 288 GATCACAATTACAAACGACAAGGG 311 >seq1936 Length=84681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 182940 TTTCCCCGAAGTGGAAAGACGCCGTAATGATCCCTTCCAACAACAGAGAGGCCAGCGACA 182999 || || ||||| ||||| || ||||| | || || ||||| || ||| |||| |||| Sbjct 50690 TTACCACGAAGGGGAAATACTCCGTATTTGTCTCTACCAACCACTCCGAGACCAGAGACA 50631 Query 183000 GCGAGTGTCTTTGCCGAGTCACCCTCTGTCACGATGAGTGTACA 183043 || ||||| || || ||||| ||||| |||| |||||||||||| Sbjct 50630 GCCAGTGTTTTGGCTGAGTCCCCCTCGGTCAGGATGAGTGTACA 50587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657739683992560