Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq330 87.8 5e-12 >seq330 Length=40897 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||| | ||||||| |||| || |||| ||||| | ||| | | | |||| ||| Sbjct 30244 GCTCCGACACCAACAAACATCTCATCAAACTCAGATCCAGATGCATAATAAAATGGAACA 30303 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 | ||||| || ||||| ||||| || ||||| || ||||| || ||||||||||| || Sbjct 30304 TCAGCTTCACCAGCTACAGCCCTTGCAAGAAGAGTTTTACCAGTACCAGGTGGTCCAACT 30363 Query 289231 AATAGAACTCC 289241 || |||| ||| Sbjct 30364 AACAGAATTCC 30374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471536187095051