Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1221 179 5e-39 seq185 179 5e-39 seq9 143 3e-28 seq3491 129 7e-24 seq266 113 6e-19 seq243 98.7 1e-14 seq1687 91.5 2e-12 seq4371 89.7 6e-12 >seq1221 Length=266329 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 26359 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 26418 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 26419 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 26478 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 26479 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 26538 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 26539 GCACCTGCTTCAGCACCTTGTA 26560 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 32923 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 32982 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 32983 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 33042 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 33043 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 33102 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 33103 GCACCTGCTTCAGCACCTTGTA 33124 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 46267 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 46326 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 46327 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 46386 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 46387 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 46446 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 46447 GCACCTGCTTCAGCACCTTGTA 46468 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 65878 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 65819 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 65818 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 65759 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 65758 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 65699 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 65698 GCACCTGCTTCAGCACCTTGTA 65677 >seq185 Length=400649 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 338040 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 338099 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 338100 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 338159 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 338160 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 338219 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 338220 GCACCTGCTTCAGCACCTTGTA 338241 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 351983 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 352042 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 352043 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 352102 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 352103 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 352162 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 352163 GCACCTGCTTCAGCACCTTGTA 352184 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 359878 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 359937 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 359938 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 359997 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 359998 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 360057 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 360058 GCACCTGCTTCAGCACCTTGTA 360079 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 333553 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 333494 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 333493 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 333434 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 333433 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 333374 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | || ||||| ||||||||||| Sbjct 333373 GTACTTGCTTCAGCACCTTGTA 333352 >seq9 Length=3543431 Score = 143 bits (158), Expect = 3e-28 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| || | | || Sbjct 3444996 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGAGGTGA 3445055 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||| || ||||||| || | | Sbjct 3445056 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 3445115 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 3445116 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 3445175 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 3445176 GGACCTGCTTCAGCACCTTGTAGA 3445199 >seq3491 Length=11026 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| || | || Sbjct 7094 GCTTGGCCAGCTCGCCGGGCAGCAGCAACCGCACGGCCGTCTGGATCTCCCGGGACGTGA 7035 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || |||| ||| ||||| ||||||| || | | Sbjct 7034 TGGTGGAGCGCTTGTTGTAATGAGCCAAACGCGACGCCTCCCCCGCGATGCGCTCAAAGA 6975 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||| ||||||| ||| | |||| ||||||||| || |||| Sbjct 6974 TGTCATTGACGAACGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTATCAGGGT 6915 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 6914 GCACCTGCTTCAGCACCTTGTAGA 6891 >seq266 Length=585698 Score = 113 bits (124), Expect = 6e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||||||| || | | || |||||||||||||||||| | | Sbjct 268190 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTG 268131 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| |||||| |||| |||||||| |||| ||||||||| |||||| | ||| | Sbjct 268130 CGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGCGACTCGATG 268071 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||||| ||| Sbjct 268070 ATGGCGTACCAGAGCTG 268054 Score = 109 bits (120), Expect = 7e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1630138 CCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCC 1630197 ||||| | |||| ||| | |||||| | | | |||| | ||| || || ||||| Sbjct 264582 CCCGCGATGTAGCTGCCCGTGGCGCGGATGCAGCTCACGGCCAGGCCAATCCCCCCGGCA 264523 Query 1630198 GACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCC 1630257 |||||||||||||||||||| || ||||||||||||||||| |||||||| |||| || Sbjct 264522 GACTTGGAGATGAGCGCGCAGTGCTTGAGCGTGTCGTAGATCCCCTCGATGCTGTCGTCC 264463 Query 1630258 TTCATGTCCACGAGAAAGCA 1630277 |||||| || || ||||| Sbjct 264462 TTCATGCACAGCAGGAAGCA 264443 Score = 89.7 bits (98), Expect = 6e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||| ||| | |||||||||||| | ||||||||||| | || ||| |||||| ||| Sbjct 270351 CGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGGCGCTGGGCCTCGGGGCTCTCGAACG 270292 Query 1627847 GCAGGTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGT 1627906 | ||||| | || ||||||| |||||||||||||||| ||| || || |||| Sbjct 270291 GGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGGCGGT 270232 Query 1627907 GGCGCAGGTTCGAG 1627920 ||||| ||| ||| Sbjct 270231 GGCGCCTGTTGGAG 270218 >seq243 Length=25666195 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 20267084 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 20267025 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| || ||| |||||| || |||| ||| || || Sbjct 20267024 GTACTGGATGGGGAAGACGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 20266971 >seq1687 Length=6338 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 5440 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 5499 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || || ||||| ||||| ||| ||||||||||||||||||| |||||| Sbjct 5500 TTCTTCCACGCCATGGGGGGGCGTGAGGGGCTCATCGACACGGCCGTCAAGACCGCCGAG 5559 Query 509156 ACGGG 509160 || || Sbjct 5560 ACCGG 5564 >seq4371 Length=799 Score = 89.7 bits (98), Expect = 6e-12 Identities = 122/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 507724 CGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCA 507783 |||||| | |||||||||||||||| ||||| |||||||||||||||||| |||| || Sbjct 486 CGTCACCACCCCCTACAACGCCGACTTCGACGGGGACGAGATGAACCTGCACCTGCCGCA 427 Query 507784 GTCCGAGACGGCGCGCGCCGAGGT---GACGCACACCATGAGCGTGTCGCTCAAGACCGT 507840 ||| | | ||||||||||| | | || | ||| ||| ||| || || ||| Sbjct 426 GTCGCTGGAGACGCGCGCCGAGATCCAGGAGCTGGCGATG---GTGCCGCGCATGATCGT 370 Query 507841 GTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGACGCCCTC 507889 | || ||| ||||| |||| |||| ||| | || |||| | ||| Sbjct 369 CACCCCCCAGTCCAACCGGCCCGTCATGGGCATCGTGCAGGACACGCTC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105914548735591