Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1221 179 5e-39
seq185 179 5e-39
seq9 143 3e-28
seq3491 129 7e-24
seq266 113 6e-19
seq243 98.7 1e-14
seq1687 91.5 2e-12
seq4371 89.7 6e-12
>seq1221
Length=266329
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 26359 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 26418
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 26419 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 26478
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 26479 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 26538
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 26539 GCACCTGCTTCAGCACCTTGTA 26560
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 32923 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 32982
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 32983 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 33042
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 33043 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 33102
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 33103 GCACCTGCTTCAGCACCTTGTA 33124
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 46267 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 46326
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 46327 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 46386
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 46387 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 46446
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 46447 GCACCTGCTTCAGCACCTTGTA 46468
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 65878 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 65819
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 65818 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 65759
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 65758 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 65699
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 65698 GCACCTGCTTCAGCACCTTGTA 65677
>seq185
Length=400649
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 338040 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 338099
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 338100 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 338159
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 338160 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 338219
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 338220 GCACCTGCTTCAGCACCTTGTA 338241
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 351983 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 352042
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 352043 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 352102
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 352103 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 352162
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 352163 GCACCTGCTTCAGCACCTTGTA 352184
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 359878 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 359937
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 359938 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 359997
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 359998 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 360057
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 360058 GCACCTGCTTCAGCACCTTGTA 360079
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 333553 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 333494
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 333493 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 333434
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 333433 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 333374
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| || ||||| |||||||||||
Sbjct 333373 GTACTTGCTTCAGCACCTTGTA 333352
>seq9
Length=3543431
Score = 143 bits (158), Expect = 3e-28
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||||||||| || | | ||
Sbjct 3444996 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGAGGTGA 3445055
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| ||| || ||||||| || | |
Sbjct 3445056 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 3445115
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 3445116 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 3445175
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 3445176 GGACCTGCTTCAGCACCTTGTAGA 3445199
>seq3491
Length=11026
Score = 129 bits (142), Expect = 7e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| || | ||
Sbjct 7094 GCTTGGCCAGCTCGCCGGGCAGCAGCAACCGCACGGCCGTCTGGATCTCCCGGGACGTGA 7035
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | || |||| ||| ||||| ||||||| || | |
Sbjct 7034 TGGTGGAGCGCTTGTTGTAATGAGCCAAACGCGACGCCTCCCCCGCGATGCGCTCAAAGA 6975
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| ||||| ||||||| ||| | |||| ||||||||| || ||||
Sbjct 6974 TGTCATTGACGAACGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTATCAGGGT 6915
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
|||||||||| |||||||||||||
Sbjct 6914 GCACCTGCTTCAGCACCTTGTAGA 6891
>seq266
Length=585698
Score = 113 bits (124), Expect = 6e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
|||||||| |||||||||||| || | | || |||||||||||||||||| | |
Sbjct 268190 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTG 268131
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
||||| |||||| |||| |||||||| |||| ||||||||| |||||| | ||| |
Sbjct 268130 CGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGCGACTCGATG 268071
Query 1628287 ATGGCCGACCAGATCTG 1628303
||||| |||||| |||
Sbjct 268070 ATGGCGTACCAGAGCTG 268054
Score = 109 bits (120), Expect = 7e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 1630138 CCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCC 1630197
||||| | |||| ||| | |||||| | | | |||| | ||| || || |||||
Sbjct 264582 CCCGCGATGTAGCTGCCCGTGGCGCGGATGCAGCTCACGGCCAGGCCAATCCCCCCGGCA 264523
Query 1630198 GACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCC 1630257
|||||||||||||||||||| || ||||||||||||||||| |||||||| |||| ||
Sbjct 264522 GACTTGGAGATGAGCGCGCAGTGCTTGAGCGTGTCGTAGATCCCCTCGATGCTGTCGTCC 264463
Query 1630258 TTCATGTCCACGAGAAAGCA 1630277
|||||| || || |||||
Sbjct 264462 TTCATGCACAGCAGGAAGCA 264443
Score = 89.7 bits (98), Expect = 6e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846
||| ||| | |||||||||||| | ||||||||||| | || ||| |||||| |||
Sbjct 270351 CGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGGCGCTGGGCCTCGGGGCTCTCGAACG 270292
Query 1627847 GCAGGTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGT 1627906
| ||||| | || ||||||| |||||||||||||||| ||| || || ||||
Sbjct 270291 GGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGGCGGT 270232
Query 1627907 GGCGCAGGTTCGAG 1627920
||||| ||| |||
Sbjct 270231 GGCGCCTGTTGGAG 270218
>seq243
Length=25666195
Score = 98.7 bits (108), Expect = 1e-14
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 20267084 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 20267025
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| || ||| |||||| || |||| ||| || ||
Sbjct 20267024 GTACTGGATGGGGAAGACGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 20266971
>seq1687
Length=6338
Score = 91.5 bits (100), Expect = 2e-12
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 5440 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 5499
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || || ||||| ||||| ||| ||||||||||||||||||| ||||||
Sbjct 5500 TTCTTCCACGCCATGGGGGGGCGTGAGGGGCTCATCGACACGGCCGTCAAGACCGCCGAG 5559
Query 509156 ACGGG 509160
|| ||
Sbjct 5560 ACCGG 5564
>seq4371
Length=799
Score = 89.7 bits (98), Expect = 6e-12
Identities = 122/169 (72%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 507724 CGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCA 507783
|||||| | |||||||||||||||| ||||| |||||||||||||||||| |||| ||
Sbjct 486 CGTCACCACCCCCTACAACGCCGACTTCGACGGGGACGAGATGAACCTGCACCTGCCGCA 427
Query 507784 GTCCGAGACGGCGCGCGCCGAGGT---GACGCACACCATGAGCGTGTCGCTCAAGACCGT 507840
||| | | ||||||||||| | | || | ||| ||| ||| || || |||
Sbjct 426 GTCGCTGGAGACGCGCGCCGAGATCCAGGAGCTGGCGATG---GTGCCGCGCATGATCGT 370
Query 507841 GTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGACGCCCTC 507889
| || ||| ||||| |||| |||| ||| | || |||| | |||
Sbjct 369 CACCCCCCAGTCCAACCGGCCCGTCATGGGCATCGTGCAGGACACGCTC 321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105914548735591
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