Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq91 123 2e-23 seq12 109 5e-19 seq266 87.8 2e-12 >seq91 Length=4318309 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || ||||| || ||||| || ||| Sbjct 4012395 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACAATTACTCTTGAAGTGGAGCCCAGT 4012454 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 4012455 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4012514 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | | |||| || || ||| Sbjct 4012515 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4012574 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| ||||| |||| || | || ||| Sbjct 4012575 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012622 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 4011710 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 4011769 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 4011770 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 4011829 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| ||||| || || |||||||| || | | | | |||| || || || Sbjct 4011830 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 4011889 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || ||| ||||| |||| || | ||||| Sbjct 4011890 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4011937 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 4011939 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAGT 4011998 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 4011999 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012058 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | |||| || || ||| Sbjct 4012059 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012118 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || ||| ||||| |||| || | ||||| Sbjct 4012119 ATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4012165 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 4011483 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4011542 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 4011543 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4011602 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| || | | | | |||| || || ||| Sbjct 4011603 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011662 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || ||| ||||| |||| Sbjct 4011663 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 4011697 >seq12 Length=7699506 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 4631907 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631848 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| || || || ||||| ||||| Sbjct 4631847 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAG 4631788 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || ||||| || ||| | | | | |||| || || ||| Sbjct 4631787 CAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTGACTACAAC 4631728 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || |||||||| || || ||||||||| Sbjct 4631727 ATCCAGAAGGAATCCACCCTGCACTTGGTG 4631698 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || || || || ||| Sbjct 4631679 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631620 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 4631619 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 4631560 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || || |||||||| ||| | | | |||| || || ||| Sbjct 4631559 CAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 4631500 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || |||||||| || || ||||||||| Sbjct 4631499 ATCCAGAAGGAATCCACCCTGCACTTGGTG 4631470 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| || || || || || || || || ||| Sbjct 4631224 GATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 4631165 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 4631164 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 4631105 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| || || || || |||||||| ||| | | | |||| || || || Sbjct 4631104 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 4631045 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || || | ||| |||| Sbjct 4631044 CATCCAGAAGGAGTCTACTCTGCATCTCGTGCTGCG 4631009 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || || || || ||| Sbjct 4631451 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631392 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 4631391 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 4631332 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || || |||||||| ||| | | | |||| || || ||| Sbjct 4631331 CAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 4631272 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || | ||| |||| Sbjct 4631271 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCG 4631237 >seq266 Length=585698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 138775 GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTG 138834 |||| |||| ||| || || || || || |||||||| || || || ||||| ||| Sbjct 270379 GCCAGCTCGCAGCTGGCTTCCAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTG 270320 Query 138835 AGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGC 138894 || ||||||||| ||||||| |||| || | || |||| ||||||||||| Sbjct 270319 AGGCGCTGGGCCTCGGGGCTCTCGAACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGG 270260 Query 138895 CCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 || |||||||| | |||| ||||| |||||| Sbjct 270259 CCCTGCACGCCGATGCCGATGGGGCGGTGGCGC 270227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449813677226440