Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq91 84.2 2e-11
>seq91
Length=4318309
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| || || | || ||||| ||||| ||| |||| ||| | |
Sbjct 4011711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4011770
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || ||||| || || |||||| | ||| ||||||
Sbjct 4011771 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4011830
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || |||| ||| || || |||||||| |||| || || | |||||||||
Sbjct 4011831 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4011890
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || ||||| || || ||||| ||||| || | || | || ||||
Sbjct 4011891 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGGAA 4011939
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||||||||| || | || ||||| ||||| ||| |||| ||| | |
Sbjct 4012167 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4012226
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | || || ||||| || || |||||| | ||| ||||||
Sbjct 4012227 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 4012286
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | || || || |||||||| || | || || | |||||||||
Sbjct 4012287 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAAC 4012346
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || ||||| || || ||||| ||||| ||
Sbjct 4012347 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTG 4012379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398804254655947
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |