Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq223 113 3e-19
>seq223
Length=4343944
Score = 113 bits (124), Expect = 3e-19
Identities = 316/479 (66%), Gaps = 6/479 (1%)
Strand=Plus/Minus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
||||| || |||||||||||||| | ||||| ||||| || || || || ||||| |
Sbjct 3136948 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGAACCCCACGG 3136889
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
| || || ||||| || | | ||| | ||||| || || ||||| || |
Sbjct 3136888 GGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCTTTTGTCATA 3136829
Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAATAAGTTG 281609
| |||||||| | | |||| || | || | | || || ||||| || || |
Sbjct 3136828 GCCCTCTCACCCTCATACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGAGTAGGTGG 3136771
Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668
| || ||||| ||| ||| ||||| || ||||| | | || | | |||||
Sbjct 3136770 TGAAGG-TCTGGGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCTGTCATC 3136712
Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728
| || |||||||| || | || || || ||||| |||||||| | |||| | ||
Sbjct 3136711 ACTCCCCCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGGAGCAGATCC 3136652
Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788
|| | || ||| | | || | ||| ||||| ||||| | |||||| ||||| |||
Sbjct 3136651 TGCACATTCTCAGACTTGTCTCCCATAAGGATAGCAGCTTGTACAGCAGCGCCATAAGCA 3136592
Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848
||||| ||||||||||| | | | || || | |||||||||||| || | ||
Sbjct 3136591 ACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGTCCTGTAGC 3136532
Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907
|||| | | ||| || ||||||| || || || || | || || || || | |||
Sbjct 3136531 AGTTTTTGGATCTTTGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTGGATCTG 3136473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739897743764598
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |