Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq223 113 3e-19 >seq223 Length=4343944 Score = 113 bits (124), Expect = 3e-19 Identities = 316/479 (66%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| || |||||||||||||| | ||||| ||||| || || || || ||||| | Sbjct 3136948 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGAACCCCACGG 3136889 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || || ||||| || | | ||| | ||||| || || ||||| || | Sbjct 3136888 GGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCTTTTGTCATA 3136829 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAATAAGTTG 281609 | |||||||| | | |||| || | || | | || || ||||| || || | Sbjct 3136828 GCCCTCTCACCCTCATACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGAGTAGGTGG 3136771 Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || ||||| ||| ||| ||||| || ||||| | | || | | ||||| Sbjct 3136770 TGAAGG-TCTGGGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCTGTCATC 3136712 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | || |||||||| || | || || || ||||| |||||||| | |||| | || Sbjct 3136711 ACTCCCCCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGGAGCAGATCC 3136652 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || | ||| ||||| ||||| | |||||| ||||| ||| Sbjct 3136651 TGCACATTCTCAGACTTGTCTCCCATAAGGATAGCAGCTTGTACAGCAGCGCCATAAGCA 3136592 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 ||||| ||||||||||| | | | || || | |||||||||||| || | || Sbjct 3136591 ACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGTCCTGTAGC 3136532 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 |||| | | ||| || ||||||| || || || || | || || || || | ||| Sbjct 3136531 AGTTTTTGGATCTTTGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTGGATCTG 3136473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739897743764598