Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq91 161 2e-34
seq12 150 4e-31
seq243 127 4e-24
>seq91
Length=4318309
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||||| || | |||||| || ||||| ||||| || || || |||||
Sbjct 4012621 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4012562
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | |||||||| || || || ||||||||||| || || || || ||||| ||
Sbjct 4012561 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4012502
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || ||||| || || ||||| ||||| || ||| | || || |||
Sbjct 4012501 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 4012442
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| || ||||| || |||| ||||| ||||| ||||||||
Sbjct 4012441 TCAAGAGTAATTGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4012395
>seq12
Length=7699506
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || || | ||| || || |||||||| || ||||| ||||| || || || |||||
Sbjct 4631681 CCACCCCTGAGACGTAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4631740
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| ||||| || || || ||||| |||||
Sbjct 4631741 AGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 4631800
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| || || ||||| || || ||||||||||| || ||| | || || ||
Sbjct 4631801 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 4631860
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | || || |||||||| |||| ||||| || || |||||||||
Sbjct 4631861 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4631908
Score = 129 bits (142), Expect = 1e-24
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || | ||||| || | ||||||||||| || ||||| || || || || |
Sbjct 4630995 TACCACCCCTGAGGCGCAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 4631054
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||| ||||| || || || ||||| || || || || || ||||| || |
Sbjct 4631055 ACAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGG 4631114
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| || || || || ||||| || ||| | || || |
Sbjct 4631115 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 4631174
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || |||||||| |||| || || ||||| ||||||||
Sbjct 4631175 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223
>seq243
Length=25666195
Score = 127 bits (140), Expect = 4e-24
Identities = 126/163 (77%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208
|||||||||||||| ||| | |||||||| || ||||| || ||||| || || |||||
Sbjct 1803639 GCATTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1803698
Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268
| ||||| || ||||| || | ||||| | ||||| ||||| ||||| || ||||||
Sbjct 1803699 TTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTCACCATGTTT 1803758
Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
|| || | ||| | || ||||| ||| ||||||| || ||||
Sbjct 1803759 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCCGGTGGCCAAG 1803801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981639473718897
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |