Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq91 134 1e-26
seq12 134 1e-26
seq266 118 1e-21
>seq91
Length=4318309
Score = 134 bits (148), Expect = 1e-26
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||||| || ||||| || ||||| || || ||| | ||| || |||||||||||
Sbjct 4011680 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 4011621
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || |||| ||||||||| || || |||||||||||||| |||||| |||
Sbjct 4011620 AGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4011561
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| ||
Sbjct 4011560 CACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 4011501
Query 133643 TTTTACGAAAATCTGCATG 133661
|| || || |||||||||
Sbjct 4011500 CTTGACAAAGATCTGCATG 4011482
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||||| || ||||| || ||||| || || ||| | ||| || |||||||||||
Sbjct 4011908 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 4011849
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| |||| |||||| || || || |||||||||||||| |||||| |||
Sbjct 4011848 AGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4011789
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| ||
Sbjct 4011788 CACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 4011729
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || ||||||||
Sbjct 4011728 CTTCACAAAGATCTGCAT 4011711
Score = 131 bits (144), Expect = 2e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| || ||||| || ||||| || || || ||| | || || ||||||||||
Sbjct 4012364 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCA-TCTTCCAGCTGCTTGC 4012306
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || |||| |||||| ||||| || |||||||||||||| |||||| ||
Sbjct 4012305 CAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 4012246
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| || || ||||||| || |||| ||||| ||| ||||| ||||| |
Sbjct 4012245 TCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 4012186
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || |||||||||||
Sbjct 4012185 TCTTGACAAAAATCTGCAT 4012167
Score = 116 bits (128), Expect = 4e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||||| || ||||| || ||||| || || ||| | ||| || |||||||||||
Sbjct 4012592 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 4012533
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || |||| ||||||||| || || |||||||||||||| |||||| |||
Sbjct 4012532 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4012473
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| |||||||||| || | || | || || || ||||| ||
Sbjct 4012472 CACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTCAGGGT 4012413
Query 133643 TTTTACGAAAATCTGCATG 133661
|| || || |||||||||
Sbjct 4012412 CTTCACAAAGATCTGCATG 4012394
Score = 113 bits (124), Expect = 4e-20
Identities = 146/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || ||||| || ||||| || || || ||| | || || ||||||||||
Sbjct 4012136 GGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCA-TCTTCCAGCTGCTTGC 4012078
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || |||| |||||| ||||| || |||||||||||||| |||||| ||
Sbjct 4012077 CAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 4012018
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| ||||| ||||||| || || | |||| ||| ||||| |||| |
Sbjct 4012017 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGG 4011958
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 4011957 TCTTCACAAAGATCTGCAT 4011939
>seq12
Length=7699506
Score = 134 bits (148), Expect = 1e-26
Identities = 150/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| || ||| ||| | || || |||||||| ||
Sbjct 4631027 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTACC 4631085
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| |||| |||||| || || || ||||| |||||||| |||||| |||
Sbjct 4631086 AGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 4631145
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| ||||||| || || | ||||| ||| ||||||||||| ||
Sbjct 4631146 CACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 4631205
Query 133643 TTTTACGAAAATCTGCAT 133660
||| || || ||||||||
Sbjct 4631206 TTTCACAAAGATCTGCAT 4631223
Score = 123 bits (136), Expect = 2e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | |||||| || ||||| || ||||| || || ||| | || ||||||
Sbjct 4631702 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGC 4631761
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || |||| |||||| || ||||| ||||| |||||||| ||||
Sbjct 4631762 TGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATC 4631821
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | |||| ||||| ||||||| || || | ||||| ||| |||||
Sbjct 4631822 TTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCA 4631881
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || ||||| ||||||||
Sbjct 4631882 GTCAGGGTCTTCACGAAGATCTGCAT 4631907
>seq266
Length=585698
Score = 118 bits (130), Expect = 1e-21
Identities = 98/120 (82%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923
||||||| |||||||| | |||||| |||||||| ||||| ||||| ||||| || |
Sbjct 268198 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 268139
Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983
||||||||| |||||| ||||| ||||||||||||||||| ||| || ||| |||||
Sbjct 268138 TGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGCG 268079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCG 148559
|||||||| | ||| || || ||| || ||||| |||||||| || || || ||
Sbjct 270412 CCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCGCAGCTGGCTTCCAGAGCC 270353
Query 148560 CCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTC---GCTTTCG 148616
||||||||||| ||||| || ||| |||||| |||| | | ||| ||| |||
Sbjct 270352 CCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAG--GCGCTG-GGCCTCGGGGCTCTCG 270296
Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676
|||| |||| | | | || |||||||| |||||||| ||||| | ||| |||||
Sbjct 270295 AACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGG 270236
Query 148677 CGGTGTTTAATGTTGGAG 148694
||||| ||||||||
Sbjct 270235 CGGTGGCGCCTGTTGGAG 270218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483330623892520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |