Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq91 134 1e-26 seq12 134 1e-26 seq266 118 1e-21 >seq91 Length=4318309 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 4011680 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 4011621 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 4011620 AGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4011561 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 4011560 CACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 4011501 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 4011500 CTTGACAAAGATCTGCATG 4011482 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 4011908 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 4011849 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| |||| |||||| || || || |||||||||||||| |||||| ||| Sbjct 4011848 AGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4011789 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 4011788 CACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 4011729 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4011728 CTTCACAAAGATCTGCAT 4011711 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || || || ||| | || || |||||||||| Sbjct 4012364 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCA-TCTTCCAGCTGCTTGC 4012306 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| ||||| || |||||||||||||| |||||| || Sbjct 4012305 CAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 4012246 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 4012245 TCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 4012186 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 4012185 TCTTGACAAAAATCTGCAT 4012167 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 4012592 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 4012533 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 4012532 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4012473 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| |||||||||| || | || | || || || ||||| || Sbjct 4012472 CACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTCAGGGT 4012413 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 4012412 CTTCACAAAGATCTGCATG 4012394 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| || ||||| || || || ||| | || || |||||||||| Sbjct 4012136 GGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCA-TCTTCCAGCTGCTTGC 4012078 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| ||||| || |||||||||||||| |||||| || Sbjct 4012077 CAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 4012018 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | |||| ||| ||||| |||| | Sbjct 4012017 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGG 4011958 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 4011957 TCTTCACAAAGATCTGCAT 4011939 >seq12 Length=7699506 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || ||| ||| | || || |||||||| || Sbjct 4631027 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTACC 4631085 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| |||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 4631086 AGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 4631145 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | ||||| ||| ||||||||||| || Sbjct 4631146 CACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 4631205 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 4631206 TTTCACAAAGATCTGCAT 4631223 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| || || ||| | || |||||| Sbjct 4631702 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGC 4631761 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || |||| |||||| || ||||| ||||| |||||||| |||| Sbjct 4631762 TGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATC 4631821 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||| ||||||| || || | ||||| ||| ||||| Sbjct 4631822 TTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCA 4631881 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 4631882 GTCAGGGTCTTCACGAAGATCTGCAT 4631907 >seq266 Length=585698 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||||||| | |||||| |||||||| ||||| ||||| ||||| || | Sbjct 268198 TGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 268139 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||||| |||||| ||||| ||||||||||||||||| ||| || ||| ||||| Sbjct 268138 TGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGCG 268079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCG 148559 |||||||| | ||| || || ||| || ||||| |||||||| || || || || Sbjct 270412 CCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCGCAGCTGGCTTCCAGAGCC 270353 Query 148560 CCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTC---GCTTTCG 148616 ||||||||||| ||||| || ||| |||||| |||| | | ||| ||| ||| Sbjct 270352 CCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAG--GCGCTG-GGCCTCGGGGCTCTCG 270296 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 |||| |||| | | | || |||||||| |||||||| ||||| | ||| ||||| Sbjct 270295 AACGGGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGG 270236 Query 148677 CGGTGTTTAATGTTGGAG 148694 ||||| |||||||| Sbjct 270235 CGGTGGCGCCTGTTGGAG 270218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483330623892520