Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq294 156 5e-33
>seq294
Length=553464
Score = 156 bits (172), Expect = 5e-33
Identities = 644/1002 (64%), Gaps = 29/1002 (3%)
Strand=Plus/Plus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
|| ||||| | |||||| || | ||| | || || || ||| ||| ||||||
Sbjct 272850 TTGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACTTCAGTGTCGAAC 272909
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
|| || ||||| | ||| || ||| | | ||||| || || || || || ||
Sbjct 272910 TTATTAGCGAAGAAGTGGTGGT--TTCGT-AGCATCCAGTTCAGGTCTCCTACCCCAAAA 272966
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
|| || || || || ||||| || || ||||| || || || | || || | | ||||
Sbjct 272967 ACACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACA 273026
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
| || || |||| |||||||| || ||||| | | || | ||| || || ||||
Sbjct 273027 TTACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCGTTCATATCAGAAACGTCG 273086
Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365
||||||| |||| || | || || || || || | || | |||||| | || |||||
Sbjct 273087 TACTTGT-CACTCGAAGAAACCGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCA 273145
Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425
||||| || ||||| || || || || || | |||||| ||||||| | | ||||
Sbjct 273146 CAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACTTCAGTA---TTTT 273202
Query 162426 ATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482
| | || | ||| || | ||| | || | ||| || || ||||||||
Sbjct 273203 GCTGCTTTCTAAGACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGA 273262
Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542
||| || || | | | ||| || | | ||||||| || ||||| || | ||
Sbjct 273263 AAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTCTACC 273322
Query 162543 CTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG----TGTT 162598
|| | | | | || || ||||||| | ||| || || || | ||
Sbjct 273323 ATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCATTTTTT 273378
Query 162599 CGGTCTCTAGACTGTTA-CGACCCCCCAAGGCCTTCAGCTGACGC-ACCATCTCTAGATT 162656
| || || | |||||| || || ||| ||| | | | || || || | ||
Sbjct 273379 CTGTTTCCAAACTGTTTTCG--CCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTT 273436
Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716
|||||| | |||||||| |||| ||||| || || | ||||||||| || ||
Sbjct 273437 GGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCT 273496
Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776
|| ||| ||||| | | ||||| | || || || || | ||||| ||||| || ||
Sbjct 273497 TCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGACGCATATAC 273556
Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836
|| || || ||| ||| | ||||||||| || |||||||| |||| ||| ||||
Sbjct 273557 AACACTTTCTAACTGGCTGGAAATAAAGACATTATCAAAACACGAGGCTATTCCCTTCAC 273616
Query 162837 GGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893
|| || | || | || || ||| | || || || | |||||| | ||||||
Sbjct 273617 AGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAAATTCTG 273673
Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953
|||||| ||||| | || || | ||| |||||||| || || || || | ||||| ||
Sbjct 273674 AGGGGCATAGATTGATCTTAGAAGTCTATCGAACATGTCAATTTTGTGATAAACCACTAT 273733
Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCG 163013
|| || || || || || || || || || ||||||| | ||| ||| || |
Sbjct 273734 CGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCT 273793
Query 163014 GTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTA 163055
| | || | |||||||| | |||||||||| |||
Sbjct 273794 AGTCTTGGTGAAGGAGGCACAGTCTGCTGTCATGTTAATGTA 273835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578324100740800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |