Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq294 156 5e-33 >seq294 Length=553464 Score = 156 bits (172), Expect = 5e-33 Identities = 644/1002 (64%), Gaps = 29/1002 (3%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 || ||||| | |||||| || | ||| | || || || ||| ||| |||||| Sbjct 272850 TTGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACTTCAGTGTCGAAC 272909 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || ||||| | ||| || ||| | | ||||| || || || || || || Sbjct 272910 TTATTAGCGAAGAAGTGGTGGT--TTCGT-AGCATCCAGTTCAGGTCTCCTACCCCAAAA 272966 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || || || || || ||||| || || ||||| || || || | || || | | |||| Sbjct 272967 ACACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACA 273026 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 | || || |||| |||||||| || ||||| | | || | ||| || || |||| Sbjct 273027 TTACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCGTTCATATCAGAAACGTCG 273086 Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||||| |||| || | || || || || || | || | |||||| | || ||||| Sbjct 273087 TACTTGT-CACTCGAAGAAACCGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCA 273145 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 ||||| || ||||| || || || || || | |||||| ||||||| | | |||| Sbjct 273146 CAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACTTCAGTA---TTTT 273202 Query 162426 ATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482 | | || | ||| || | ||| | || | ||| || || |||||||| Sbjct 273203 GCTGCTTTCTAAGACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGA 273262 Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542 ||| || || | | | ||| || | | ||||||| || ||||| || | || Sbjct 273263 AAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTCTACC 273322 Query 162543 CTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG----TGTT 162598 || | | | | || || ||||||| | ||| || || || | || Sbjct 273323 ATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCATTTTTT 273378 Query 162599 CGGTCTCTAGACTGTTA-CGACCCCCCAAGGCCTTCAGCTGACGC-ACCATCTCTAGATT 162656 | || || | |||||| || || ||| ||| | | | || || || | || Sbjct 273379 CTGTTTCCAAACTGTTTTCG--CCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTT 273436 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 |||||| | |||||||| |||| ||||| || || | ||||||||| || || Sbjct 273437 GGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCT 273496 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || ||| ||||| | | ||||| | || || || || | ||||| ||||| || || Sbjct 273497 TCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGACGCATATAC 273556 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || || || ||| ||| | ||||||||| || |||||||| |||| ||| |||| Sbjct 273557 AACACTTTCTAACTGGCTGGAAATAAAGACATTATCAAAACACGAGGCTATTCCCTTCAC 273616 Query 162837 GGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 || || | || | || || ||| | || || || | |||||| | |||||| Sbjct 273617 AGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAAATTCTG 273673 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 |||||| ||||| | || || | ||| |||||||| || || || || | ||||| || Sbjct 273674 AGGGGCATAGATTGATCTTAGAAGTCTATCGAACATGTCAATTTTGTGATAAACCACTAT 273733 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCG 163013 || || || || || || || || || || ||||||| | ||| ||| || | Sbjct 273734 CGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCT 273793 Query 163014 GTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTA 163055 | | || | |||||||| | |||||||||| ||| Sbjct 273794 AGTCTTGGTGAAGGAGGCACAGTCTGCTGTCATGTTAATGTA 273835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578324100740800