Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq496 118 3e-23
seq203 104 7e-19
seq374 98.7 3e-17
seq353 98.7 3e-17
seq12 98.7 3e-17
>seq496
Length=563408
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 386959 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 387018
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 387019 CCCGGGCTTCAGC 387031
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 400744 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 400685
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 400684 CCCGGGCTTCAGC 400672
>seq203
Length=3899225
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2724127 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 2724186
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2724187 CCGGGTTTCGGC 2724198
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1209086 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1209145
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1209146 CCGGGTTTCGGC 1209157
>seq374
Length=788540
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 543605 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 543546
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 543545 CCGGGTTTCGGC 543534
>seq353
Length=1240275
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 464606 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 464547
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 464546 CCGGGTTTCGGC 464535
>seq12
Length=7699506
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 4634950 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4634891
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 4634890 CCGGGTTTCGGC 4634879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847013023335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |