Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1221 197 2e-44
seq185 197 2e-44
seq9 161 1e-33
seq3491 141 1e-27
seq266 111 2e-18
seq243 98.7 1e-14
seq500 89.7 7e-12
>seq1221
Length=266329
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 26560 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 26507
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 26506 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 26447
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 26446 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 26387
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 26386 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 26338
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 33124 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 33071
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 33070 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 33011
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 33010 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 32951
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 32950 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 32902
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 46468 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 46415
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 46414 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 46355
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 46354 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 46295
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 46294 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 46246
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 65677 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 65730
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 65731 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 65790
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 65791 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 65850
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 65851 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 65899
>seq185
Length=400649
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 338241 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 338188
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 338187 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 338128
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 338127 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 338068
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 338067 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 338019
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 352184 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 352131
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 352130 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 352071
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 352070 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 352011
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 352010 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 351962
Score = 197 bits (218), Expect = 2e-44
Identities = 182/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 360079 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 360026
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 360025 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 359966
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 359965 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 359906
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 359905 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 359857
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||| || |||||| || || |||| || |||| |||||
Sbjct 333352 TACAAGGTGCTGAAGCAAGTACACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 333405
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | ||||||| |||
Sbjct 333406 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 333465
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 333466 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 333525
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 333526 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 333574
>seq9
Length=3543431
Score = 161 bits (178), Expect = 1e-33
Identities = 183/244 (75%), Gaps = 6/244 (2%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | ||||||||||||| |||||||| ||||| |||| ||||
Sbjct 3445212 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC- 3445159
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||| |||| ||||| ||||||||||| || ||||||||||| | || |||||||
Sbjct 3445158 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCT 3445099
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
|| ||| |||||||| | || |||||||||| ||| ||| | | || ||||||
Sbjct 3445098 GGAGAAGCCTCCCGCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGATC 3445039
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| |||||||||||| | | | || || ||||||| |||||||||||| ||||||
Sbjct 3445038 CAGACAGCCGTGCGCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCCGTCTCGGAGGGC 3444979
Query 725139 ACCA 725142
||||
Sbjct 3444978 ACCA 3444975
>seq3491
Length=11026
Score = 141 bits (156), Expect = 1e-27
Identities = 173/233 (74%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||||||||| |||| |||| ||| |||| |||
Sbjct 6891 TCTACAAGGTGCTGAAGCAGGTGCACCCTGATACCGG-----CATC-TCCTCCAAGGCCA 6944
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| |||||||| ||||| ||||| ||||| | || ||||||| ||||| |||
Sbjct 6945 TGGGCATCATGAATTCGTTCGTCAATGACATCTTTGAGCGCATCGCGGGGGAGGC--GTC 7002
Query 725032 GCCT--GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089
|| | ||| | | |||||||||| ||| ||| | || ||||||||||| |||||
Sbjct 7003 GCGTTTGGCTCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGT 7062
Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| || | ||| |||||| ||||||| ||| || || |||||||||||||
Sbjct 7063 GCGGTTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCGGTGTCCGAGGGCACCA 7115
>seq266
Length=585698
Score = 111 bits (122), Expect = 2e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| |||||| ||||| ||| | | || | |||||||||||||| |||||| | |||
Sbjct 268054 CAGCTCTGGTACGCCATCATCGAGTCGCAGACGGAGACCGGCACGCCGTACATGCTGTAC 268113
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209
|| |||||| ||||| | ||||||||||||||||||||||||| | || | |||
Sbjct 268114 AAAGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 268172
Query 262210 CCTGTGCACCGAGATCGT 262227
||||||||| ||||||||
Sbjct 268173 CCTGTGCACGGAGATCGT 268190
Score = 100 bits (110), Expect = 4e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029
||||| ||| || |||||||| ||| |||||||| ||||| ||||||||||||||
Sbjct 264443 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGGATCTACGACACGCTCAAGCAC 264502
Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089
|||||||||||||||||| | ||||| || || || | |||| | | ||||||
Sbjct 264503 TGCGCGCTCATCTCCAAGTCTGCCGGGGGGATTGGCCTGGCCGTGAGCTGCATCCGCGCC 264562
Query 260090 GCGGGCGCCTACGTGGCGGG 260109
||||| |||| | |||||
Sbjct 264563 ACGGGCAGCTACATCGCGGG 264582
Score = 89.7 bits (98), Expect = 7e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993
||||| || | | ||||||||| ||| | || |||||||||||||||||| |||| |
Sbjct 271709 TGCTCCTGTCCCCCATGCCCACCGCCTCCACCGCGCAGATCCTGGGCAACAACGAGTCCA 271768
Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045
||||| | ||| |||||||||||||| ||| | || ||||| || || ||
Sbjct 271769 TCGAGCCCTACACCAGCAACATCTACACACGCAGGGTCCTCTCCGGGGAGTT 271820
>seq243
Length=25666195
Score = 98.7 bits (108), Expect = 1e-14
Identities = 91/114 (80%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||||||||| || ||||| ||| || ||| | |||||||||| |||||
Sbjct 20266971 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCGTCTTCCCCATCCAGTACCACGAC 20267030
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | ||||| ||| ||||||||||||||||| ||||| || ||||||||
Sbjct 20267031 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 20267083
>seq500
Length=221976
Score = 89.7 bits (98), Expect = 7e-12
Identities = 128/179 (72%), Gaps = 10/179 (6%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-A 725023
||| ||||| ||||||||||| || |||||||||| | || || | ||| | | |
Sbjct 28334 AAGGCCATGAGCATCATGAACTCCTTCATCAACGACATCTTTGAGCGGCT-GGCGCTGGA 28392
Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083
|||| | |||||| | || || ||| ||| |||| |||||||||||
Sbjct 28393 GGCCTCGCACCTGGCCCAGTC--------GCTCCACCATCACGTCGCGGGAGATCCAGAC 28444
Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||||| ||| | ||| |||||| ||||||| ||| || || |||||||||||||
Sbjct 28445 GGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCGGTGTCCGAGGGCACCA 28503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176371849221526
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