Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq91 129 5e-25
seq12 129 5e-25
>seq91
Length=4318309
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || ||| ||| |||| ||||||||||| || |||||
Sbjct 4012585 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 4012526
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || ||||||||| | |||| || ||||||||| |||||| ||||| | |
Sbjct 4012525 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4012466
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | ||||| || | || || || ||||| |||| || ||||||
Sbjct 4012465 TCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTCTTACCAGTCAGGGTCTTCACA 4012406
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 4012405 AAGATCTGCAT 4012395
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || ||| ||| |||| ||||||||||| || |||||
Sbjct 4011901 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAA 4011842
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || |||||| || | |||| || ||||||||| |||||| ||||| | |
Sbjct 4011841 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4011782
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||| | ||||| || || || |||| || ||||||
Sbjct 4011781 TCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 4011722
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 4011721 AAGATCTGCAT 4011711
Score = 120 bits (132), Expect = 3e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || ||| ||| |||| ||||||||||| || || ||
Sbjct 4011673 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 4011614
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || ||||||||| | |||| || ||||||||| |||||| ||||| | |
Sbjct 4011613 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4011554
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||| | ||||| || || || |||| || || |||
Sbjct 4011553 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 4011494
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 4011493 AAGATCTGCAT 4011483
Score = 114 bits (126), Expect = 1e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || || || | || ||||||||||| || || ||
Sbjct 4012129 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAG 4012070
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || |||||| || | |||| || ||||||||| |||||| ||||| | |
Sbjct 4012069 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4012010
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||| | ||||| || || || ||||| || ||||||
Sbjct 4012009 TCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACA 4011950
Query 35726 AATATCTGCATTC 35738
|| ||||||||||
Sbjct 4011949 AAGATCTGCATTC 4011937
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || || || | || ||||||||||| || || ||
Sbjct 4012357 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCTTCCAGCTGCTTGCCAGCGAAG 4012298
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || |||||| || | |||| || ||||||||| |||||| ||||| | |
Sbjct 4012297 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4012238
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || || | || ||||| | ||||| || || || |||| || || |||
Sbjct 4012237 TCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 4012178
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 4012177 AAAATCTGCAT 4012167
>seq12
Length=7699506
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||| || ||| || | || |||||||||||||| || ||
Sbjct 4631261 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAA 4631320
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || |||||| || | |||| || |||||||||| |||||| ||||| |
Sbjct 4631321 ATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 4631380
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||| | ||||| || || || ||||| |||||||||
Sbjct 4631381 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACA 4631440
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 4631441 AAGATCTGCAT 4631451
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||| || ||| || | || |||||||||||||| || ||
Sbjct 4631489 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAA 4631548
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || |||||| || | |||| || |||||||||| |||||| ||||| |
Sbjct 4631549 ATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 4631608
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||| | ||||| || || || ||||| |||||||||
Sbjct 4631609 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACA 4631668
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 4631669 AAGATCTGCAT 4631679
Score = 127 bits (140), Expect = 2e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|| ||| | ||| | ||| |||||| || |||||||| |||| || ||| || | ||
Sbjct 4631011 CAGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 4631070
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
|||||||||||||| || || |||| || |||||| || | |||| || |||||||||
Sbjct 4631071 TTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 4631130
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
| |||||| ||||| | | | ||||| || | || ||||| | ||||| ||
Sbjct 4631131 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 4631190
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || |||| ||||||||||| ||||||||
Sbjct 4631191 CTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223
Score = 127 bits (140), Expect = 2e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | || ||| ||| | || || ||||||||||| || ||
Sbjct 4631717 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCGAGCTGCTTACCAGCGAAG 4631776
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || |||||| || | ||||| || |||||||||| |||||| ||||| | ||
Sbjct 4631777 ATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTT 4631836
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | || ||||| | ||||| || || || |||| || |||||
Sbjct 4631837 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4631896
Query 35726 AATATCTGCATTCTG 35740
|| ||||||||| ||
Sbjct 4631897 AAGATCTGCATTTTG 4631911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450709510088840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |