Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_027016.1
Length=226084
Score E
Sequences producing significant alignments: (Bits) Value
seq567 111 2e-19
>seq567
Length=396540
Score = 111 bits (122), Expect = 2e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054
||||| |||||||| ||| | || || || || || ||||| ||| | | ||| |
Sbjct 56643 CAGATGATTGACGGAGAAATGTATCCCCCAACGGTGAAGGACACCCAGGCAGAGATGCTC 56584
Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114
||| || ||| || ||| | | | ||| | |||| | ||| ||||||| |
Sbjct 56583 TACCCTCCGCACGTGCCGGAACACCTGCAGTTCTCTGTGGGGCAGGAGGTGTTTGGTTTG 56524
Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174
|| || ||| | ||| ||||||| | ||||||||||| ||||||||| |||| || |||
Sbjct 56523 GTCCCGGGTCTGATGATGTACGCTACAATCTGGCTGAGGGAGCACAACCGGGTCTGTGAC 56464
Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCACTCG 214230
| || || || ||||| || || ||| | ||||| ||||| ||||| | |||||
Sbjct 56463 ATCCTCAAGCAGGAGCATCCAGAGTGGGATGACGAGCAGCTCTTCCAAACAACTCG 56408
Score = 84.2 bits (92), Expect = 3e-11
Identities = 176/260 (68%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 214635 TACGGTGATATCGAAGCCGTCGAACTCTACGCTGATTTCCTCGCTGAAAAACCGTGTCCC 214694
||||| || ||||| ||| | || || || | | |||| | ||||| ||| | ||
Sbjct 54619 TACGGAGACATCGATGCCATGGAGCTGTATCCAGGCCTCCTTGTGGAAAAGCCGCGGCCA 54560
Query 214695 GATGCCATCCTCGGTGACGGCG-TCCTCGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACT 214753
| |||||| |||| || | || | | ||| ||| || || ||||| || | |||||
Sbjct 54559 GGCGCCATCTTCGGCGA-GACGATGGTGGAGATGGGAGCGCCCTTCTCTCTCAAAGGACT 54501
Query 214754 CGCGGCGAACGTCATCTGCTCCCCGGGCTACTGGAAACGCAACACACTCGGTAGCTCCGC 214813
|| ||||| |||||||||||| | |||||||| | | ||| |||| || |
Sbjct 54500 GATGGGGAACGCCATCTGCTCCCCCGAGTACTGGAAGCCGAGCACCTTCGGCGGCAAAGT 54441
Query 214814 GAGTTTCAACATCGTGAGGAGCGCGACCCTTCAGTCTCTCATCTGTAGCAACGTCAAGGG 214873
| | ||| | ||| | | | ||| || | ||| |||||||| | |||||| || ||
Sbjct 54440 GGGCTTCGAAATCATCAATACCGCCTCCTTACAGAAGCTCATCTGCAACAACGTGAAAGG 54381
Query 214874 ATGTCCGTTAGCCGCATTCC 214893
||||| || |||| ||||
Sbjct 54380 CTGTCCCTTCACCGCCTTCC 54361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723205869815520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |