Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq567 111 2e-19 >seq567 Length=396540 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| |||||||| ||| | || || || || || ||||| ||| | | ||| | Sbjct 56643 CAGATGATTGACGGAGAAATGTATCCCCCAACGGTGAAGGACACCCAGGCAGAGATGCTC 56584 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| || ||| || ||| | | | ||| | |||| | ||| ||||||| | Sbjct 56583 TACCCTCCGCACGTGCCGGAACACCTGCAGTTCTCTGTGGGGCAGGAGGTGTTTGGTTTG 56524 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 || || ||| | ||| ||||||| | ||||||||||| ||||||||| |||| || ||| Sbjct 56523 GTCCCGGGTCTGATGATGTACGCTACAATCTGGCTGAGGGAGCACAACCGGGTCTGTGAC 56464 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCACTCG 214230 | || || || ||||| || || ||| | ||||| ||||| ||||| | ||||| Sbjct 56463 ATCCTCAAGCAGGAGCATCCAGAGTGGGATGACGAGCAGCTCTTCCAAACAACTCG 56408 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 214635 TACGGTGATATCGAAGCCGTCGAACTCTACGCTGATTTCCTCGCTGAAAAACCGTGTCCC 214694 ||||| || ||||| ||| | || || || | | |||| | ||||| ||| | || Sbjct 54619 TACGGAGACATCGATGCCATGGAGCTGTATCCAGGCCTCCTTGTGGAAAAGCCGCGGCCA 54560 Query 214695 GATGCCATCCTCGGTGACGGCG-TCCTCGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACT 214753 | |||||| |||| || | || | | ||| ||| || || ||||| || | ||||| Sbjct 54559 GGCGCCATCTTCGGCGA-GACGATGGTGGAGATGGGAGCGCCCTTCTCTCTCAAAGGACT 54501 Query 214754 CGCGGCGAACGTCATCTGCTCCCCGGGCTACTGGAAACGCAACACACTCGGTAGCTCCGC 214813 || ||||| |||||||||||| | |||||||| | | ||| |||| || | Sbjct 54500 GATGGGGAACGCCATCTGCTCCCCCGAGTACTGGAAGCCGAGCACCTTCGGCGGCAAAGT 54441 Query 214814 GAGTTTCAACATCGTGAGGAGCGCGACCCTTCAGTCTCTCATCTGTAGCAACGTCAAGGG 214873 | | ||| | ||| | | | ||| || | ||| |||||||| | |||||| || || Sbjct 54440 GGGCTTCGAAATCATCAATACCGCCTCCTTACAGAAGCTCATCTGCAACAACGTGAAAGG 54381 Query 214874 ATGTCCGTTAGCCGCATTCC 214893 ||||| || |||| |||| Sbjct 54380 CTGTCCCTTCACCGCCTTCC 54361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723205869815520