Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq266 98.7 1e-15 >seq266 Length=585698 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/207 (73%), Gaps = 14/207 (7%) Strand=Plus/Minus Query 78722 CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA--TGACTC 78779 |||| || |||| | | |||||||| | |||| |||| |||| || ||||| || || Sbjct 270420 CCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCGCAGCTGGCTT 270361 Query 78780 GAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTGG 78838 ||| ||| ||| ||| | | ||| |||||| || |||||| ||| | |||| || Sbjct 270360 C--CAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGG-CGCTGGGCCTCGG 270304 Query 78839 T-CTCGTCGAACGAAAGGCCGAGCATCA---TGAAGACATCGGCCAGGCCCTGGACGCCG 78894 ||| ||||||| || |||||| ||||| | |||||||||||||| |||||| Sbjct 270303 GGCTC-TCGAACG---GGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCG 270248 Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTG 78921 || |||| || ||||||||| ||||| Sbjct 270247 ATGCCGATGGGGCGGTGGCGCCTGTTG 270221 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| |||||||| ||||| |||||||| ||||||||| Sbjct 264440 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGGATCTACGACACGCTCAAG 264499 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 | ||||||| ||||||||||| ||||||| || || Sbjct 264500 CACTGCGCGCTCATCTCCAAGTCTGCCGGGGGGATTGG 264537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || || ||||||| ||||||||||| ||||||| | ||||||||| |||||||| ||| Sbjct 264537 CCAATCCCCCCGGCAGACTTGGAGATGAGCGCGCAGTGCTTGAGCGTGTCGTAGATCCCC 264478 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 264477 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 264440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| || ||||||||||||| | ||||| ||||||||| Sbjct 268194 CTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 268135 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||| |||||||| ||||| |||||||||||| |||||||| Sbjct 268134 CTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 268087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140 || || | ||||||||| || |||| |||||||| |||||||||||||||| ||||| Sbjct 270219 TCCAACAGGCGCCACCGCCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATC 270278 Query 20141 ATGCTCGGCCTCTCATTCGACGATCCCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGA 20199 || | | | | ||||| ||| |||| | ||| |||||| || |||||| || Sbjct 270279 CTGATGCGGTACCCGTTCGAGAGCCCCGAGGCCCAGCG-CCTCAACCAGCACATCTTTGA 270337 Query 20200 GGCCGTGTACCACGCGGCCCTCCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCC 20256 | || | ||| ||| ||| |||||| | ||||| || |||| ||| | || || Sbjct 270338 GACCATTTACTACGGGGC---TCTGGAAGCCAGCTGCGAGCTGGCCAGGGAGCAGGGGCC 270394 Query 20257 GTACGAGACGTTCAAGGGGTCGCC 20280 |||||||| | | |||| || || Sbjct 270395 CTACGAGACCTACGAGGGATCTCC 270418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548422479555120