Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq266 98.7 1e-15
>seq266
Length=585698
Score = 98.7 bits (108), Expect = 1e-15
Identities = 151/207 (73%), Gaps = 14/207 (7%)
Strand=Plus/Minus
Query 78722 CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA--TGACTC 78779
|||| || |||| | | |||||||| | |||| |||| |||| || ||||| || ||
Sbjct 270420 CCGGAGATCCCTCGTAGGTCTCGTAGGGCCCCTGCTCCCTGGCCAGCTCGCAGCTGGCTT 270361
Query 78780 GAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTGG 78838
||| ||| ||| ||| | | ||| |||||| || |||||| ||| | |||| ||
Sbjct 270360 C--CAGAGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGG-CGCTGGGCCTCGG 270304
Query 78839 T-CTCGTCGAACGAAAGGCCGAGCATCA---TGAAGACATCGGCCAGGCCCTGGACGCCG 78894
||| ||||||| || |||||| ||||| | |||||||||||||| ||||||
Sbjct 270303 GGCTC-TCGAACG---GGTACCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCG 270248
Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTG 78921
|| |||| || ||||||||| |||||
Sbjct 270247 ATGCCGATGGGGCGGTGGCGCCTGTTG 270221
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||| ||||| || |||||||| |||||||| ||||| |||||||| |||||||||
Sbjct 264440 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGGATCTACGACACGCTCAAG 264499
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
| ||||||| ||||||||||| ||||||| || ||
Sbjct 264500 CACTGCGCGCTCATCTCCAAGTCTGCCGGGGGGATTGG 264537
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
|| || ||||||| ||||||||||| ||||||| | ||||||||| |||||||| |||
Sbjct 264537 CCAATCCCCCCGGCAGACTTGGAGATGAGCGCGCAGTGCTTGAGCGTGTCGTAGATCCCC 264478
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751
||||| |||||||||||| | ||||||||||||
Sbjct 264477 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 264440
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||| | ||| || ||||||| || ||||||||||||| | ||||| |||||||||
Sbjct 268194 CTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 268135
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||| ||| |||||||| ||||| |||||||||||| ||||||||
Sbjct 268134 CTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 268087
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/204 (71%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 20081 TCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATG 20140
|| || | ||||||||| || |||| |||||||| |||||||||||||||| |||||
Sbjct 270219 TCCAACAGGCGCCACCGCCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATC 270278
Query 20141 ATGCTCGGCCTCTCATTCGACGATCCCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGA 20199
|| | | | | ||||| ||| |||| | ||| |||||| || |||||| ||
Sbjct 270279 CTGATGCGGTACCCGTTCGAGAGCCCCGAGGCCCAGCG-CCTCAACCAGCACATCTTTGA 270337
Query 20200 GGCCGTGTACCACGCGGCCCTCCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCC 20256
| || | ||| ||| ||| |||||| | ||||| || |||| ||| | || ||
Sbjct 270338 GACCATTTACTACGGGGC---TCTGGAAGCCAGCTGCGAGCTGGCCAGGGAGCAGGGGCC 270394
Query 20257 GTACGAGACGTTCAAGGGGTCGCC 20280
|||||||| | | |||| || ||
Sbjct 270395 CTACGAGACCTACGAGGGATCTCC 270418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548422479555120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |