Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq26 95.1 1e-14
seq1936 91.5 2e-13
seq266 89.7 6e-13
seq29 89.7 6e-13
>seq26
Length=3213793
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||||||||| |||| ||| ||||||||||| ||||| ||| | ||||| || ||
Sbjct 1072571 GTGAAAATGTAGCGAGGGCTGGCAGCATCCTTTCCACCGTGAAGCCTGGTACCAAACTGA 1072630
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | || |||| ||||| ||| |||||||| |||||||||||||||
Sbjct 1072631 CCAATAGGTTGTAGCAGATTCACATTGTTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 1072690
Query 117425 ATCGT 117429
|| ||
Sbjct 1072691 ATAGT 1072695
>seq1936
Length=84681
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||||||||| | |||||| | || || ||||| ||||| ||| ||||||||
Sbjct 56173 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGCCTCGTGCCAAACTGA 56114
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| |||| || |||||||||||||| |||||| || |||||||| ||||| | |
Sbjct 56113 CCGATAGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAATTAATA 56054
Query 152149 ATCGT 152153
|| ||
Sbjct 56053 ATAGT 56049
>seq266
Length=585698
Score = 89.7 bits (98), Expect = 6e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551
||||||| || | || ||||| ||||| || || || |||||| |||||||||||||| |
Sbjct 271707 CCTGCTCCTGTCCCCCATGCCCACCGCCTCCACCGCGCAGATCCTGGGCAACAACGAGTC 271766
Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605
||||||| ||||| | |||||||||| ||| || ||| | || |||||
Sbjct 271767 CATCGAGCCCTACACCAGCAACATCTACACACGCAGGGTCCTCTCCGGGGAGTT 271820
>seq29
Length=8961240
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | | |||||||| || || | |||||||
Sbjct 509567 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 509508
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| |||||||| ||||||||||||||||| ||||||||
Sbjct 509507 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGGCA 509448
Query 74892 AC 74893
||
Sbjct 509447 AC 509446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547113923695400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |