Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq26 95.1 1e-14 seq1936 91.5 2e-13 seq266 89.7 6e-13 seq29 89.7 6e-13 >seq26 Length=3213793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| |||| ||| ||||||||||| ||||| ||| | ||||| || || Sbjct 1072571 GTGAAAATGTAGCGAGGGCTGGCAGCATCCTTTCCACCGTGAAGCCTGGTACCAAACTGA 1072630 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || |||| ||||| ||| |||||||| ||||||||||||||| Sbjct 1072631 CCAATAGGTTGTAGCAGATTCACATTGTTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 1072690 Query 117425 ATCGT 117429 || || Sbjct 1072691 ATAGT 1072695 >seq1936 Length=84681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| ||| |||||||| Sbjct 56173 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGCCTCGTGCCAAACTGA 56114 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || |||||||||||||| |||||| || |||||||| ||||| | | Sbjct 56113 CCGATAGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAATTAATA 56054 Query 152149 ATCGT 152153 || || Sbjct 56053 ATAGT 56049 >seq266 Length=585698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||||||| || | || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 271707 CCTGCTCCTGTCCCCCATGCCCACCGCCTCCACCGCGCAGATCCTGGGCAACAACGAGTC 271766 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 ||||||| ||||| | |||||||||| ||| || ||| | || ||||| Sbjct 271767 CATCGAGCCCTACACCAGCAACATCTACACACGCAGGGTCCTCTCCGGGGAGTT 271820 >seq29 Length=8961240 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | | |||||||| || || | ||||||| Sbjct 509567 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 509508 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| ||||||||||||||||| |||||||| Sbjct 509507 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGGCA 509448 Query 74892 AC 74893 || Sbjct 509447 AC 509446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547113923695400