Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq510 221 2e-52
>seq510
Length=5355126
Score = 221 bits (244), Expect = 2e-52
Identities = 582/880 (66%), Gaps = 14/880 (2%)
Strand=Plus/Minus
Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730
|| ||||||| ||| |||| || ||||||||||||||||| || || |||||| ||||
Sbjct 354954 CCGCTGAGCCAGGAGGAGGCAGACTTTCCCATCGCCTACTCCATGGTCATCCACGACAAA 354895
Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790
|| |||||||| ||||| |||||| || || ||||||| || |||||| ||||||||||
Sbjct 354894 ATAGAGATGTTTGAGCGGCTCCTGCGGTCCCTCTACGCTCCCCAGAACGTCTACTGCGTT 354835
Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850
||| | ||| ||||||| | || ||| || ||| ||||||||| |||
Sbjct 354834 CACATTGACAACAAGTCCCCGGCCGCTTTCCAGGAGGCCGTGCGGGCCATCGCAGCCTGC 354775
Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910
||||| || || |||| ||| ||| | | ||||| || | ||||||| ||
Sbjct 354774 TTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAATGTGGTCTATGCCTCCTGGTCCCGG 354715
Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970
||||||| ||||||| ||||||| ||||||| ||| || |||| |||
Sbjct 354714 CTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCGTGGCAATAC 354655
Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030
| |||||| || || | || ||||| ||||||||||| |||||||| || |
Sbjct 354654 ATCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCGTTCC 354595
Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC--CAAC-CACAAG 14087
||||| | ||| || ||||| | ||||| ||| | ||| || | ||||
Sbjct 354594 CTGAAAGTGCTGCAGGGGCAGAACAGCATGGAGTCTGAG---AAGCCCTCAGCTGCCAAG 354538
Query 14088 CTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147
| ||| ||| || | ||| |||| | | | | || |||| | |
Sbjct 354537 CAGCAGCGCTGGCGGTACCACCACAAAGTGGGGAAGTTCATC-TCCCGGACAACCACAG- 354480
Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207
|| ||| | || || || | || |||||| || |||| | ||| ||| ||| |
Sbjct 354479 AGAAAC----CGCCACCACCCCACAACTCCCCCATGTTCACGGGCAGCGCATACATTGTG 354424
Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCAC 14267
||||| |||| || ||| | ||| || || || | ||| | | || | |
Sbjct 354423 GTCACGCGGGCCTTTGTGCAGCACGTTTTCGAGAACCCCACAGTGCAACAGTTCCTCGAG 354364
Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327
||| | ||||||| |||||||| |||||||| | ||||||||| | | | ||| |
Sbjct 354363 TGGGCCAAGGACACCTACAGCCCTGACGAGCATGTCTGGGCCACCCTCAACCGCATGCCC 354304
Query 14328 GGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAG 14387
|| ||| || | || ||| | ||||| | | |||||||||| ||| |
Sbjct 354303 GGTGTGCCAGGCGCCATGCCCCAGAGTGACAAGTTCCAGCTCTCGGACATGAACGCCCTG 354244
Query 14388 GTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCG 14447
| | | ||||||||||| ||| ||||| || | || || || || | ||||||
Sbjct 354243 CCCCGCCTGGTCAAGTGGCAGTACATGGAGGGCGACACCAGCAAGGGTGCGCCCTACCCG 354184
Query 14448 CCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG 14507
|| ||| |||| ||| | |||| ||||||||| |||| | ||||||||| |||
Sbjct 354183 CCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACGTGCCCTGG 354124
Query 14508 CTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
|| ||| | | || || || |||||||||||||||
Sbjct 354123 ATGCTCCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGAC 354085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658616320436480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |