Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq510 221 2e-52 >seq510 Length=5355126 Score = 221 bits (244), Expect = 2e-52 Identities = 582/880 (66%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| || ||||||||||||||||| || || |||||| |||| Sbjct 354954 CCGCTGAGCCAGGAGGAGGCAGACTTTCCCATCGCCTACTCCATGGTCATCCACGACAAA 354895 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| ||||| |||||| || || ||||||| || |||||| |||||||||| Sbjct 354894 ATAGAGATGTTTGAGCGGCTCCTGCGGTCCCTCTACGCTCCCCAGAACGTCTACTGCGTT 354835 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | ||| ||||||| | || ||| || ||| ||||||||| ||| Sbjct 354834 CACATTGACAACAAGTCCCCGGCCGCTTTCCAGGAGGCCGTGCGGGCCATCGCAGCCTGC 354775 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| || || |||| ||| ||| | | ||||| || | ||||||| || Sbjct 354774 TTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAATGTGGTCTATGCCTCCTGGTCCCGG 354715 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||| ||||||| ||||||| ||||||| ||| || |||| ||| Sbjct 354714 CTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCGTGGCAATAC 354655 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| || || | || ||||| ||||||||||| |||||||| || | Sbjct 354654 ATCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCGTTCC 354595 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC--CAAC-CACAAG 14087 ||||| | ||| || ||||| | ||||| ||| | ||| || | |||| Sbjct 354594 CTGAAAGTGCTGCAGGGGCAGAACAGCATGGAGTCTGAG---AAGCCCTCAGCTGCCAAG 354538 Query 14088 CTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 | ||| ||| || | ||| |||| | | | | || |||| | | Sbjct 354537 CAGCAGCGCTGGCGGTACCACCACAAAGTGGGGAAGTTCATC-TCCCGGACAACCACAG- 354480 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 || ||| | || || || | || |||||| || |||| | ||| ||| ||| | Sbjct 354479 AGAAAC----CGCCACCACCCCACAACTCCCCCATGTTCACGGGCAGCGCATACATTGTG 354424 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCAC 14267 ||||| |||| || ||| | ||| || || || | ||| | | || | | Sbjct 354423 GTCACGCGGGCCTTTGTGCAGCACGTTTTCGAGAACCCCACAGTGCAACAGTTCCTCGAG 354364 Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| | ||||||| |||||||| |||||||| | ||||||||| | | | ||| | Sbjct 354363 TGGGCCAAGGACACCTACAGCCCTGACGAGCATGTCTGGGCCACCCTCAACCGCATGCCC 354304 Query 14328 GGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAG 14387 || ||| || | || ||| | ||||| | | |||||||||| ||| | Sbjct 354303 GGTGTGCCAGGCGCCATGCCCCAGAGTGACAAGTTCCAGCTCTCGGACATGAACGCCCTG 354244 Query 14388 GTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCG 14447 | | | ||||||||||| ||| ||||| || | || || || || | |||||| Sbjct 354243 CCCCGCCTGGTCAAGTGGCAGTACATGGAGGGCGACACCAGCAAGGGTGCGCCCTACCCG 354184 Query 14448 CCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG 14507 || ||| |||| ||| | |||| ||||||||| |||| | ||||||||| ||| Sbjct 354183 CCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACGTGCCCTGG 354124 Query 14508 CTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| | | || || || ||||||||||||||| Sbjct 354123 ATGCTCCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGAC 354085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658616320436480