Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq682 118 9e-22 seq810 91.5 1e-13 >seq682 Length=840739 Score = 118 bits (130), Expect = 9e-22 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 497122 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 497181 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || ||| |||| ||| ||| ||| |||| || || | || || || || | Sbjct 497182 CCCCTCCTCTCTGCTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 497240 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| ||||| || ||||||||||||||| ||||| || || Sbjct 497241 CCCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 497289 >seq810 Length=1044949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 110404 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 110463 ||||| |||||||| |||| || ||||||||| | | ||| | || ||| || || ||| Sbjct 263772 AGCTCTCTGCTGAGCACTATATTAATCCTGTCTTTTAAAGGACGATGCTTCTCAGGAATG 263831 Query 110464 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||||| || ||||||||||||| ||| | ||||| || ||| Sbjct 263832 GAGAACCAGGTTTTTCTACCCATTACCACTGCATTCTGTTTACCT 263876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406236502676916