Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq91 125 6e-24 seq12 116 3e-21 >seq91 Length=4318309 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | ||||||||||||||||| || Sbjct 4012394 CATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACAATTACTCTTGAAGTGGAGCCCAG 4012453 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| |||||||| || || || || Sbjct 4012454 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 4012513 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||||||| | ||| | || || ||||| Sbjct 4012514 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 4012573 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||| || ||| | || |||| |||| || |||||||| Sbjct 4012574 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 4012622 >seq12 Length=7699506 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||||||| | || || ||||| || || || Sbjct 4631223 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4631164 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 4631163 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 4631104 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || ||||||| || ||| | ||||| |||||| Sbjct 4631103 CAGAGGCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 4631044 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| || | ||| | || |||| | ||||||| Sbjct 4631043 ATCCAGAAGGAGTCTACTCTGCATCTCGTGCTGCGCCTCAGGGGTGG 4630997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434837271408960