Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq682 136 4e-27
>seq682
Length=840739
Score = 136 bits (150), Expect = 4e-27
Identities = 125/158 (79%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
|||||| || |||||||| |||||||| | || || ||||| ||||| ||||| || |
Sbjct 493813 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCGAG 493872
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||| ||||| || | |||||||||||||| |||| ||| |||||| | ||||||||
Sbjct 493873 TCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCACAACGTAGAA 493932
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773
||||| |||| ||||| || || | ||||||||||
Sbjct 493933 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 493970
Score = 136 bits (150), Expect = 4e-27
Identities = 125/158 (79%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631
|||||||||| | || || ||||| |||| ||||| |||||||| | |||||| |||
Sbjct 493970 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTACGTTGTGAATGGTGAGT 493911
Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691
|||| |||||||||||||| | || ||||| ||||| | || ||||| ||||| ||||
Sbjct 493910 TGTCTTGCCAGCTCTATCAGAGGTCAGGAGATATGGGACTCGGAGTGCCTTTCAATATTG 493851
Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
| || || | |||||||| |||||||| || ||||||
Sbjct 493850 CCAGCTATTCACTGCTCACATACATGATTGCCCATGTC 493813
Score = 95.1 bits (104), Expect = 1e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || |||||||| ||||||||||| || || || || ||||| || ||||||||
Sbjct 497132 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 497191
Query 6959 CGAGATG-GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| | || ||| ||| |||| ||||| || || || || || | ||| ||||| |||||
Sbjct 497192 C-TGCTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTT 497250
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGG 7043
|||||| | |||||||| ||||
Sbjct 497251 CACCCCTTTTGCAGAGAGCTCTTTGG 497276
Score = 95.1 bits (104), Expect = 1e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | ||||||||||| ||||| ||| | || || || || || |
Sbjct 497276 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 497217
Query 34362 TGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420
|||| |||| ||| ||| || | | |||||||| || ||||| || || || || |||
Sbjct 497216 TGGATAAGCAGGGTTTCAGCAGCA-GAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTC 497158
Query 34421 CAGTGGAGACACTTTGGGGCGGAGTA 34446
|||||||| |||||||| || || ||
Sbjct 497157 CAGTGGAGGCACTTTGGAGCAGAATA 497132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448178782252560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |