Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq682 136 4e-27 >seq682 Length=840739 Score = 136 bits (150), Expect = 4e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||| ||||| ||||| || | Sbjct 493813 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCGAG 493872 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | |||||||||||||| |||| ||| |||||| | |||||||| Sbjct 493873 TCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCACAACGTAGAA 493932 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| |||| ||||| || || | |||||||||| Sbjct 493933 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 493970 Score = 136 bits (150), Expect = 4e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| |||| ||||| |||||||| | |||||| ||| Sbjct 493970 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTACGTTGTGAATGGTGAGT 493911 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| |||||||||||||| | || ||||| ||||| | || ||||| ||||| |||| Sbjct 493910 TGTCTTGCCAGCTCTATCAGAGGTCAGGAGATATGGGACTCGGAGTGCCTTTCAATATTG 493851 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||||||| |||||||| || |||||| Sbjct 493850 CCAGCTATTCACTGCTCACATACATGATTGCCCATGTC 493813 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 497132 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 497191 Query 6959 CGAGATG-GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || ||| ||| |||| ||||| || || || || || | ||| ||||| ||||| Sbjct 497192 C-TGCTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTT 497250 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGG 7043 |||||| | |||||||| |||| Sbjct 497251 CACCCCTTTTGCAGAGAGCTCTTTGG 497276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||||||||||| ||||| ||| | || || || || || | Sbjct 497276 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 497217 Query 34362 TGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| |||| ||| ||| || | | |||||||| || ||||| || || || || ||| Sbjct 497216 TGGATAAGCAGGGTTTCAGCAGCA-GAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTC 497158 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||| |||||||| || || || Sbjct 497157 CAGTGGAGGCACTTTGGAGCAGAATA 497132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448178782252560