Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq682 96.9 3e-15
seq401 82.4 6e-11
>seq682
Length=840739
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|||||||| | || |||||||||||||| | || |||||||| | ||| |||||
Sbjct 493805 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 493864
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| || || ||||| ||| |||| ||||| || | |||||||| | ||| || || ||
Sbjct 493865 ACTCCGAGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCACA 493924
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
|| || ||||| | | | || |||||||||| | ||||
Sbjct 493925 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 493965
>seq401
Length=734631
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 3272 GTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTGGTGTTATGTGTGTGGAAAGC 3331
|| |||||||| | || || || ||||| |||||||||||||| ||||| ||||| |||
Sbjct 461741 GTTAACTGGGGCAGGATCGTGGCCTTCTTCGAGTTTGGTGGTGTGATGTGCGTGGAGAGC 461682
Query 3332 GTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCCGCGTGGATGACAGA 3384
||||| | | || | |||| || |||| ||| || || |||||||| ||
Sbjct 461681 GTCAACCGGGAGATGTCTCCCCTTGTGGACAGCATCGCTGCCTGGATGACTGA 461629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414401417420572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |