Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq682 96.9 3e-15 seq401 82.4 6e-11 >seq682 Length=840739 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | ||| ||||| Sbjct 493805 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 493864 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| |||| ||||| || | |||||||| | ||| || || || Sbjct 493865 ACTCCGAGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCACA 493924 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || |||||||||| | |||| Sbjct 493925 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 493965 >seq401 Length=734631 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 3272 GTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTGGTGTTATGTGTGTGGAAAGC 3331 || |||||||| | || || || ||||| |||||||||||||| ||||| ||||| ||| Sbjct 461741 GTTAACTGGGGCAGGATCGTGGCCTTCTTCGAGTTTGGTGGTGTGATGTGCGTGGAGAGC 461682 Query 3332 GTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCCGCGTGGATGACAGA 3384 ||||| | | || | |||| || |||| ||| || || |||||||| || Sbjct 461681 GTCAACCGGGAGATGTCTCCCCTTGTGGACAGCATCGCTGCCTGGATGACTGA 461629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414401417420572