Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq91 167 5e-36 seq12 165 2e-35 >seq91 Length=4318309 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | || ||| Sbjct 4011694 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4011635 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||| || |||| |||||||||||| Sbjct 4011634 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4011575 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 4011574 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4011515 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 4011514 TTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTT 4011480 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | || ||| Sbjct 4011922 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4011863 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || || | || || ||||| |||| |||||||||||| Sbjct 4011862 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 4011803 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||||||||||| ||||| ||| Sbjct 4011802 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 4011743 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 4011742 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4011711 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | || || | |||||| Sbjct 4012378 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCT 4012319 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || || || || |||| |||||||||||| Sbjct 4012318 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 4012259 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||| | ||||||||||| ||||| ||| Sbjct 4012258 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTC 4012199 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 4012198 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 4012167 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || || || || |||||||| || || | || || | |||||| Sbjct 4012150 AGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCT 4012091 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || || || || |||| |||||||||||| Sbjct 4012090 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 4012031 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| |||||||| ||| Sbjct 4012030 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGTC 4011971 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | ||||||| Sbjct 4011970 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 4011938 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | || ||| Sbjct 4012606 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 4012547 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 4012546 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4012487 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || || || ||||| || ||| Sbjct 4012486 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGTC 4012427 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 4012426 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4012395 >seq12 Length=7699506 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| || ||||| || || |||||||| || || | ||||| | ||||| Sbjct 4631695 TAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4631754 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| |||||||| || |||||||| || | || || |||||||||| || |||||||| Sbjct 4631755 TTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTC 4631814 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| ||||| ||||| ||||||||| | |||||||| || ||||| || Sbjct 4631815 CTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 4631874 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || ||||| || || | ||||||||| Sbjct 4631875 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 4631910 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| || |||||||| || || | ||||| | |||||| Sbjct 4631012 AGCACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 4631071 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || || | || || ||||| |||| || ||||||||| Sbjct 4631072 TCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4631131 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | |||||||| || ||||| ||| Sbjct 4631132 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4631191 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | |||||| Sbjct 4631192 TTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4631223 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 4631240 AGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 4631299 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || || | || || ||||| |||| || ||||||||| Sbjct 4631300 TCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4631359 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | |||||||| || ||||| ||| Sbjct 4631360 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4631419 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 4631420 TTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631451 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| || ||||| || || |||||||| || || | ||||| | ||||| Sbjct 4631467 TAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 4631526 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||| || ||||| || || | || || ||||| |||| || |||||||| Sbjct 4631527 TTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 4631586 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| |||||||| || ||||||||| | |||||||| || ||||| || Sbjct 4631587 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 4631646 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || | || || ||||| | |||||| Sbjct 4631647 CTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 4631679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158930369050895