Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq91 147 5e-30 seq12 140 8e-28 >seq91 Length=4318309 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || ||||| || |||| ||||| || | || ||| | ||||| Sbjct 4012151 CAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATC 4012092 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| ||||||||||| Sbjct 4012091 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 4012032 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || |||| ||||| || Sbjct 4012031 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCTAGAGTGATGGT 4011972 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||| || || | || | |||||| Sbjct 4011971 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 4011938 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | || || | ||| || Sbjct 4011695 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4011636 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||||||||| Sbjct 4011635 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 4011576 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 4011575 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 4011516 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 4011515 CTTGCCAGTCA 4011505 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | || ||| | ||||| Sbjct 4012379 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGACCATC 4012320 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| ||||||||||| Sbjct 4012319 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 4012260 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || ||||| || || || || || | ||||| || Sbjct 4012259 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGT 4012200 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 4012199 CTTGCCAGTCA 4012189 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | || || | ||| || Sbjct 4012607 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4012548 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| ||||||||||| Sbjct 4012547 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 4012488 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || ||||| || | || || || Sbjct 4012487 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGAGTAATTGT 4012428 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 4012427 CTTACCAGTCA 4012417 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | || || | ||| || Sbjct 4011923 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4011864 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| || || || | || || || || ||||| ||||||||||| Sbjct 4011863 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4011804 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 4011803 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 4011744 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 4011743 CTTGCCAGTCA 4011733 >seq12 Length=7699506 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| || |||| ||||| || | || || | ||||||| Sbjct 4631696 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4631755 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || | || || || || ||||| || |||||||| Sbjct 4631756 TCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 4631815 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||| |||||||| || || || || | ||||| ||| Sbjct 4631816 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4631875 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | |||||||| Sbjct 4631876 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 4631910 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || |||||||||||||| || |||| ||||| |||| || || | ||||| Sbjct 4631239 CAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 4631298 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| |||||||| || || | || || || || ||||| || |||||||| Sbjct 4631299 TTCCAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 4631358 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 4631359 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 4631418 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| ||||| ||||| Sbjct 4631419 CTTGCCAGTCAAGGTTTT 4631436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192303186916562