Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq682 138 9e-28
seq810 91.5 1e-13
>seq682
Length=840739
Score = 138 bits (152), Expect = 9e-28
Identities = 130/166 (78%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772
|||||| ||||| || || |||||||| ||||| || || |||||||| || || || ||
Sbjct 493804 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 493863
Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832
||| ||||| ||||| || ||||||||||| ||||||||||| || | ||| || |
Sbjct 493864 CACTCCGAGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCAC 493923
Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | ||||||||| ||||| | ||||| |||
Sbjct 493924 AACGTAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGA 493969
Score = 96.9 bits (106), Expect = 3e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075
|| |||||||||||||| || || || ||||||| || ||||| || ||| |||| |||
Sbjct 497144 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGCTGCT-GAA 497202
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||| |||| || || | || || || || ||||| ||||| ||||| || |
Sbjct 497203 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACCCCTTTTGC 497262
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||||||||||| ||||| || ||
Sbjct 497263 AGAGAGCTCTTTGGCATTTGTAGAACC 497289
>seq810
Length=1044949
Score = 91.5 bits (100), Expect = 1e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346
||||| |||||||| |||| || | ||||||| | | ||| | || ||| || || |||
Sbjct 263772 AGCTCTCTGCTGAGCACTATATTAATCCTGTCTTTTAAAGGACGATGCTTCTCAGGAATG 263831
Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
|||||||| || ||||||||||||| ||| | ||||| ||||||
Sbjct 263832 GAGAACCAGGTTTTTCTACCCATTACCACTGCATTCTGTTTACCT 263876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406089329448778
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |