Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq682 138 9e-28 seq810 91.5 1e-13 >seq682 Length=840739 Score = 138 bits (152), Expect = 9e-28 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 493804 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 493863 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| ||||| ||||| || ||||||||||| ||||||||||| || | ||| || | Sbjct 493864 CACTCCGAGTCCCATATCTCCTGACCTCTGATAGAGCTGGCAAGACAACTCACCATTCAC 493923 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| ||||| | ||||| ||| Sbjct 493924 AACGTAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGA 493969 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || ||| |||| ||| Sbjct 497144 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGCTGCT-GAA 497202 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| ||||| || | Sbjct 497203 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACCCCTTTTGC 497262 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 497263 AGAGAGCTCTTTGGCATTTGTAGAACC 497289 >seq810 Length=1044949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 ||||| |||||||| |||| || | ||||||| | | ||| | || ||| || || ||| Sbjct 263772 AGCTCTCTGCTGAGCACTATATTAATCCTGTCTTTTAAAGGACGATGCTTCTCAGGAATG 263831 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| || ||||||||||||| ||| | ||||| |||||| Sbjct 263832 GAGAACCAGGTTTTTCTACCCATTACCACTGCATTCTGTTTACCT 263876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406089329448778