Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq243 116 3e-21
seq29 113 4e-20
>seq243
Length=25666195
Score = 116 bits (128), Expect = 3e-21
Identities = 107/134 (80%), Gaps = 1/134 (1%)
Strand=Plus/Minus
Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621
|| || |||| | |||||||| || |||||||||||||| || | ||| |||||||| ||
Sbjct 20270019 ATTCATACCT-CATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 20269961
Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681
|| || || |||||||| || | ||||| || ||||||||||| || ||||| || ||
Sbjct 20269960 CCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGC 20269901
Query 4682 GGCAAACGCTACTA 4695
||||| |||||||
Sbjct 20269900 TGCAAAAGCTACTA 20269887
>seq29
Length=8961240
Score = 113 bits (124), Expect = 4e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || || || || ||||| ||||| | || ||||| ||
Sbjct 509567 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 509508
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 509507 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGGCA 509448
Query 4692 AC 4693
||
Sbjct 509447 AC 509446
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/130 (77%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
||| || ||| || | |||||| ||||| || || ||||||||||||||||| |||| ||
Sbjct 503835 AAAGCTCTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 503776
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
|||||| |||||||| | ||| || | || || || |||||||| || | || || |
Sbjct 503775 TATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTCG 503716
Query 5041 TTAAATCAAC 5050
||||||||
Sbjct 503715 ACAAATCAAC 503706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426971930754359
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |