Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq243 111 2e-19 seq29 84.2 3e-11 >seq243 Length=25666195 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | |||||||||||| ||||| || ||||||| ||| | ||| || Sbjct 20270010 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 20269951 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 20269950 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACCGCTGCAAAAGC 20269892 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| ||||||||||| || || ||||| || ||||| || |||||| Sbjct 20271257 GACATGACTCCCATCCGCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 20271198 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || |||||||| || ||||| ||||| Sbjct 20271197 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 20271163 >seq29 Length=8961240 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || ||||| || || | || || Sbjct 509567 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 509508 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 509507 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCGACTGCAGCAAAGGC 509449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694539218218720